Helicobacter pylori PNG84A |
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Putative Helicobacter pylori PNG84A RM systems
Ref: Montano,V. et al. unpublished
REBASE ref # 22113
Complete sequence: 1,531,450 bp
GenBank #: CP011487
REBASE acronym: Hpy84
Org_num: 19543
All begin AA974_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1975 | polyphosphate kinase | |||
| 1985 | S | S.Hpyfe97ORF5205P (97% identity) | S.Hpy84ORF1990P | |
| 1990 | M | M.HpyCOL109II (90% identity) | M.Hpy84ORF1990P | |
| 1995 | R | HpyUM067ORF2915P (58% identity) | Hpy84ORF1990P | |
| 2000 | 626 aa hypothetical protein | |||
| 2310 | restriction endonuclease | |||
| 2315 | R | HpyID11ORF4005P (66% identity) | Hpy84ORF2315P | |
| 2320 | hydroxyethylthiazole kinase | |||
| 2605 | cadmium transporter | |||
| 2610 | S | S.HpyF009ORF3220P (94% identity) | S.Hpy84ORF2610P | |
| 2615 | membrane protein | |||
| 6850 | metal-dependent hydrolase | |||
| 6855 | R | HpyID11ORF7090P (92% identity) | Hpy84ORF6860P | |
| 6860 | M | M.HpyUM077ORF3120P (92% identity) | M.Hpy84ORF6860P | |
| 6865 | pseudogene | |||
| ??? | S | S.HpyK016ORF7195P (95% identity) | S.Hpy84ORF6860P | |
| 6880 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 115 | agmatine deiminase | |||
| 120 | M | M1.HpyJ05ORF245P (97% identity) | CCTC | M1.Hpy84ORF120P |
| 125 | M | M2.HpyCOL209VP (97% identity) | CCTC | M2.Hpy84ORF120P |
| 130 | R | HpyID11VP (87% identity) | CCTC | Hpy84ORF120P |
| 135 | pseudogene | |||
| 325 | pseudogene | |||
| 330 | M | M.HpyGH3IX (94% identity) | GATC | M.Hpy84ORF330P |
| 335 | alpha-1,2-fucosyltransferase | |||
| 1135 | exodeoxyribonuclease VII large subunit | |||
| 1140 | R | HpySG04IVP (96% identity) | CCGG | Hpy84ORF1145P |
| 1145 | M | M.HpyKG5IV (98% identity) | CCGG | M.Hpy84ORF1145P |
| 1150 | chaperone protein ClpB | |||
| 1385 | polysaccharide deacetylase | |||
| 1390 | R | HpySW24ORF1545P (93% identity) | CTNAG | Hpy84ORF1395P |
| 1395 | M | M.HpyMM11VII (99% identity) | CTNAG | M.Hpy84ORF1395P |
| 1400 | 119 aa hypothetical protein | |||
| 2055 | glutamyl-tRNA synthetase | |||
| 2060 | M | M.HpyID11III (97% identity) | ATTAAT | M.Hpy84ORF2060P |
| 2065 | glycosyltransferase 9 family protein | |||
| 2070 | GTP-binding protein | |||
| 2075 | M | M.HpyK027II (99% identity) | ACNGT | M.Hpy84ORF2075P |
| 2080 | R | HpySP501IIP (98% identity) | ACNGT | Hpy84ORF2075P |
| 2085 | DNA methyltransferase | |||
| 2080 | restriction endonuclease | |||
| 2085 | M | M.HpyID11ORF2205P (98% identity) | ACGT | M.Hpy84ORF2085P |
| 2090 | R | HpyID11ORF2205P (76% identity) | ACGT | Hpy84ORF2085P |
| 2095 | catalase | |||
| 2305 | membrane protein | |||
| 2310 | R | restriction endonuclease | GGCC | Hpy84ORF2310P |
| 2315 | type I restriction enzyme R protein | |||
| 3170 | membrane protein | |||
| 3175 | RM | HpyC119ORF3230P (61% identity) | Hpy84ORF3175BP | |
| 3180 | RM | pseudogene | Hpy84ORF3175AP | |
| 3185 | glycerol-3-phosphate dehydrogenase | |||
| 3965 | membrane protein | |||
| 3970 | R | HpyT028XP (94% identity) | GTAC | Hpy84ORF3975P |
| 3975 | M | M.HpySP504IX (96% identity) | GTAC | M.Hpy84ORF3975P |
| 3980 | DNA gyrase subunit B | |||
| 4105 | flagellar hook protein FlgE | |||
| 4110 | R | HpyID11VIIIP (98% identity) | GTNNAC | Hpy84ORF4115P |
| 4115 | M | M.HpyID11VIII (97% identity) | GTNNAC | M.Hpy84ORF4115P |
| 4120 | ATP-dependent DNA helicase | |||
| 4755 | acetyl-CoA carboxylase | |||
| 4760 | M | M.HpyMA04X (96% identity) | TCNNGA | M.Hpy84ORF4760P |
| 4765 | R | Hpyfe37ORF2030P (98% identity) | TCNNGA | Hpy84ORF4760P |
| 4770 | Laminin subunit alpha-2 precursor | |||
| 4935 | 144 aa hypothetical protein | |||
| 4940 | M | M.HpyID11XII (96% identity) | GCGC | M.Hpy84ORF4940P |
| 4945 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5395 | hydrolase | |||
| 5400 | M | M.HpyID11I (96% identity) | CATG | M.Hpy84ORF5400P |
| 5405 | R | pseudogene | CATG | Hpy84ORF5400P |
| 5410 | serine acetyltransferase | |||
| 6130 | DNA methyltransferase | |||
| 6135 | R | HpyMM06IVP (93% identity) | GANTC | Hpy84ORF6140P |
| 6140 | M | M.Hpyfe99ORF7240P (99% identity) | GANTC | M.Hpy84ORF6140P |
| 6145 | pseudogene | |||
| 6145 | pseudogene | |||
| 6150 | RM | HpyID5ORF290P (64% identity) | Hpy84ORF6150P | |
| 6155 | nicotinate-nucleotide pyrophosphorylase | |||
| 6205 | chemotaxis protein CheY | |||
| 6210 | R | HpyT008VIP (93% identity) | GAAGA | Hpy84ORF6215P |
| 6215 | M | M1.HpyMM10VI (98% identity) | GAAGA | M1.Hpy84ORF6215P |
| 6220 | M | M2.HpyUM111ORF1630P (99% identity) | GAAGA | M2.Hpy84ORF6215P |
| 6225 | glycosyltransferase 9 family protein | |||
| 6760 | 360 aa hypothetical protein | |||
| 6765 | R | HpyC2025ORF3895P (97% identity) | TGCA | Hpy84ORF6770P |
| 6770 | M | M.HpyV006XIV (97% identity) | TGCA | M.Hpy84ORF6770P |
| 6775 | 67 aa hypothetical protein | |||
| 6940 | DEAD/DEAH box helicase | |||
| 6945 | RM | restriction endonuclease | Hpy84ORF6945P | |
| 6950 | transcription elongation factor NusA | |||
| 7150 | amidophosphoribosyltransferase | |||
| ??? | RM | HpyF209ORF1377P (96% identity) | Hpy84ORF7155P | |
| 7165 | S | S.Hpy673ORF7355P (96% identity) | S.Hpy84ORF7155P | |
| 7170 | DNA polymerase I | |||
| 7435 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7440 | M | M.HpyC122ORF265P (99% identity) | CGCG | M.Hpy84ORF7440P |
| 7445 | R | HpyU005ORF6500P (98% identity) | CGCG | Hpy84ORF7440P |
| 7450 | 70 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6225 | glycosyltransferase 9 family protein | |||
| 6230 | M | M.HpyUM111ORF1645P (93% identity) | M.Hpy84ORF6230P | |
| 6235 | R | HpyID5ORF200P (89% identity) | Hpy84ORF6230P | |
| 6240 | rod shape-determining protein MreC | |||
| 6295 | endonuclease | |||
| ??? | M | M.Hpy3sORF7405P (88% identity) | M.Hpy84ORF6300P | |
| 6310 | R | HpyID11ORF6440P (85% identity) | Hpy84ORF6300P | |
| 6315 | biotin synthase | |||
| 6930 | ATP-dependent DNA helicase RecG | |||
| 6935 | M | M.HpyMA25ORF7305P (96% identity) | M.Hpy84ORF6935P | |
| 6940 | R | HpyID11ORF7025P (92% identity) | Hpy84ORF6935P | |
| 6945 | restriction endonuclease | |||