Lactobacillus casei DPC6800 |
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Putative Lactobacillus casei DPC6800 RM systems
Ref: Stefanovic,E. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21654
Contig set: 3,053,365 bp
GenBank #: LNQD00000000 (NZ_LNQD00000000)
REBASE acronym: Lca6800
Org_num: 19140
All begin AC564_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 617 | Integrase | |||
| 618 | S | S2.Lpa401ORF10935P (62% identity) | S.Lca6800ORF618P | |
| 619 | 711 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2908 | Transcriptional regulator, Cro/CI family | |||
| 2909 | M | M.LpaDM001ORF4870P (65% identity) | CTGCAG | M.Lca6800ORF2909P |
| 2910 | 55 aa hypothetical protein | |||
| ??? | R | Lca163ORF1410P (57% identity) | CTGCAG | Lca6800ORF2909P |
| 2914 | 95 aa hypothetical protein | |||
| 1534 | 108 aa hypothetical protein | |||
| 1535 | M | M.Lpa1981ORF487P (99% identity) | CTSAG | M.Lca6800ORF1535P |
| 1536 | Conjugation related protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2925 | 148 aa hypothetical protein | |||
| 2926 | R | LrhVSI43ORF12130P (40% identity) | Lca6800ORF2926P | |
| 2927 | Mobile element protein | |||