Achromatium palustre |
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Putative Achromatium palustre RM systems
Ref: Salman,V. et al. Stand Genomic Sci 11, 28 (2016)
REBASE ref # 21545
Contig set: 3,645,683 bp
GenBank #: LFCU00000000 (NZ_LFCU00000000)
REBASE acronym: ApaS2015
Org_num: 19000
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14 | 65 aa hypothetical protein | |||
| 15 | M | M.BicMT13ORF3265P (70% identity) | M.ApaS2015ORFKP | |
| 17 | 86 aa hypothetical protein TI05_02115 | |||
| 18 | S | S.Nca389ORF31160P (32% identity) | S.ApaS2015ORFKP | |
| ??? | R | Fha23008ORFAP (52% identity) | ApaS2015ORFKP | |
| 21 | 157 aa hypothetical protein TI03_00015 | |||
| 26 | 95 aa hypothetical protein | |||
| 27 | S | S.Ega24692ORF1574P (41% identity) | S.ApaS2015ORFPP | |
| 28 | R | PteMeg1ORF2479P (79% identity) | ApaS2015ORFPP | |
| 29 | M | M.MhyYB03ORF11350P (81% identity) | M.ApaS2015ORFPP | |
| 30 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | RM | Tca21228ORF1153P (22% identity) | ApaS2015ORFDP | |
| 3 | PAS domain-containing sensor histidine kinase, partial | |||
| 1 | RM | Est183ORF12880P (34% identity) | ApaS2015ORFBP | |
| 3 | 63 aa hypothetical protein | |||
| 1 | RM | PreMO1ORFAP (50% identity) | ApaS2015ORFWP | |
| 2 | 217 aa conserved hypothetical protein | |||
| 2 | RM | damage-inducible protein, partial | ApaS2015ORFYP | |
| 4 | 203 aa hypothetical protein TI05_08815 | |||
| 1 | RM | ApaS2015ORFNP (60% identity) | ApaS2015ORFB1P | |
| 3 | phosphoribosylglycinamide formyltransferase | |||
| 1 | RM | Pag7811ORF2978P (28% identity) | ApaS2015ORFIP | |
| 2 | 77 aa hypothetical protein | |||
| 1 | M | M.AspLM1ORF3910P (67% identity) | CCGCGG | M.ApaS2015ORFMP |
| 3 | 60 aa hypothetical protein | |||
| 1 | R | Ssp42902ORFKP (91% identity) | GCTNAGC | ApaS2015ORFAP |
| 2 | M | M.Ssp7003ORF13700P (90% identity) | GCTNAGC | M.ApaS2015ORFAP |
| 3 | 75 aa hypothetical protein | |||
| 2 | 97 aa hypothetical protein | |||
| 3 | M | M.Hfl51ORFIP (76% identity) | CAGCTG | M.ApaS2015ORFZP |
| 4 | R | Cli245ORF789P (60% identity) | CAGCTG | ApaS2015ORFZP |
| 5 | 610 aa hypothetical protein TI05_01875 | |||
| 1 | integron integrase | |||
| 2 | M | M.Nme98ORF3460P (52% identity) | ACCTGC | M.ApaS2015ORFXP |
| 3 | 116 aa hypothetical protein | |||
| 3 | 88 aa hypothetical protein | |||
| 5 | M | M.GprBW2ORF12500P (77% identity) | RGATCY | M.ApaS2015ORFHP |
| 7 | R | NurNm10ORF1235P (77% identity) | ApaS2015ORFHP | |
| 8 | 224 aa hypothetical protein TI05_04430, partial | |||
| 5 | 65 aa hypothetical protein | |||
| 6 | RM | EsaSSI (45% identity) | ApaS2015ORFA1P | |
| 9 | 67 aa hypothetical protein | |||
| 3 | 512 aa hypothetical protein N838_05385 | |||
| 5 | RM | TinORF509P (45% identity) | ApaS2015ORFNP | |
| 7 | 226 aa hypothetical protein TI03_03990 | |||
| 3 | 92 aa hypothetical protein | |||
| 4 | R | Mmi2070ORFMP (73% identity) | TCTAGA | ApaS2015ORFTP |
| 6 | M | M.Ocy1ORF23355P (63% identity) | TCTAGA | M.ApaS2015ORFTP |
| 6 | 245 aa hypothetical protein THIOM_001451 | |||
| 8 | M | M.AspY33ORFHP (51% identity) | RGCGCY | M.ApaS2015ORFFP |
| 9 | thiol reductase thioredoxin | |||
| 4 | 534 aa hypothetical protein, partial | |||
| 5 | R | Ssp11NORF3585P (87% identity) | GAATTC | ApaS2015ORFJP |
| 6 | M | M.Mae9443ORF5570008P (80% identity) | GAATTC | M.ApaS2015ORFJP |
| 7 | 62 aa hypothetical protein | |||
| 4 | pyruvate dehydrogenase | |||
| 5 | M | M.AauJFFORF635P (51% identity) | GCATGC | M.ApaS2015ORFUP |
| 6 | R | BspPSORF5943P (17% identity) | GCATGC | ApaS2015ORFUP |
| 7 | branched-chain alpha-keto acid dehydrogenase subunit E2 | |||
| 13 | 254 aa hypothetical protein TI03_03830 | |||
| 14 | M | M.Hsp7418ORF2659P (71% identity) | AAGCTT | M.ApaS2015ORFCP |
| ??? | R | Hsp7418ORF2659P (57% identity) | AAGCTT | ApaS2015ORFCP |
| 19 | 74 aa hypothetical protein | |||
| 17 | 100 aa hypothetical protein | |||
| 18 | RM | SfuMORF410P (38% identity) | ApaS2015ORFOP | |
| 22 | helicase | |||
| 13 | peptidase S49, partial | |||
| ??? | RM | 201 aa hypothetical protein, partial | ApaS2015ORFVP | |
| 12 | 70 aa hypothetical protein | |||
| 14 | M | M.Mko45378ORF20470P (72% identity) | GTTAAC | M.ApaS2015ORFQP |
| ??? | R | Mko45378ORF20470P (82% identity) | GTTAAC | ApaS2015ORFQP |
| 18 | 123 aa hypothetical protein | |||
| 16 | 70 aa hypothetical protein | |||
| 17 | RM | AchB3ORF2600P (19% identity) | ApaS2015ORFGP | |
| 20 | TIGR04255 family protein | |||
| 21 | RM | Sba196ORFFP (39% identity) | ApaS2015ORFRP | |
| 22 | 114 aa hypothetical protein | |||
| ??? | M | M.TmoRTORF15860P (47% identity) | GATATC | M.ApaS2015ORFSP |
| 25 | phosphate ABC transporter permease | |||
| 29 | 92 aa hypothetical protein | |||
| 30 | RM | FspCS20ORF335P (38% identity) | ApaS2015ORFLP | |
| 23 | 159 aa hypothetical protein TI05_08450 | |||
| ??? | RM | adenine methyltransferase, partial | ApaS2015ORFEP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15 | 278 aa hypothetical protein | |||
| 16 | R | Ncr49181MrrP (70% identity) | ApaS2015MrrP | |
| 17 | 187 aa hypothetical protein TI05_02855 | |||