Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1878 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1878 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
| Sequence length: | GenBank #: | |
| Chromosome: | 4,884,395 bp | CP014979 |
| plasmid pSTY1-H2662: | 94,034 bp | CP014980 |
REBASE acronym: Sen1878
Org_num: 18914
All begin AX03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20480 | restriction endonuclease | |||
| 20485 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1878IIP |
| 20490 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1878II |
| 20495 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1878II |
| 20500 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2190 | SPOR domain-containing protein | |||
| 2195 | M | DNA adenine methylase | GATC | M.Sen1878DamP |
| 2200 | ribulose-phosphate 3-epimerase | |||
| 2685 | DUF2556 domain-containing protein | |||
| 2690 | M | adenine-specific DNA-methyltransferase | ATGCAT | M.Sen1878III |
| 2695 | Fis family transcriptional regulator | |||
| 9565 | phosphohydrolase | |||
| 9570 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1878DcmP |
| 9575 | V | V.StyUK1DcmP (100% identity) | V.Sen1878DcmP | |
| 9580 | amino acid exporter | |||
| 20650 | DNA repair protein | |||
| 20655 | RM | StyUK1IV (100% identity) | GATCAG | Sen1878IV |
| 20660 | 363 aa hypothetical protein | |||
| plasmid pSTY1-H2662 | ||||
| 25905 | 0 aa hypothetical protein | |||
| 24060 | M | M.StyUK1ORFAP (100% identity) | M.Sen1878ORF24060P | |
| 24065 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18010 | cytochrome ubiquinol oxidase subunit I | |||
| 18020 | R | StyUK1IP (99% identity) | CAGAG | Sen1878IP |
| 18025 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1878I |
| 18030 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20475 | 95 aa hypothetical protein | |||
| 20480 | R | StyUK1MrrP (100% identity) | Sen1878Mrr2P | |
| 20485 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9345 | 160 aa hypothetical protein | |||
| 9350 | M | M.StyUK1V (100% identity) | GATC | M.Sen1878ORF9350P |
| 9355 | 129 aa hypothetical protein | |||