Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1898 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1898 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
| Sequence length: | GenBank #: | |
| Chromosome: | 4,784,385 bp | CP014971 |
| plasmid pSTY1-1898: | 95,780 bp | CP014972 |
| plasmid pSTY2-1898: | 93,960 bp | CP014973 |
REBASE acronym: Sen1898
Org_num: 18905
All begin AX01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19735 | restriction endonuclease | |||
| 19740 | R | StyLT2IIP (100% identity) | GAGNNNNNNRTAYG | Sen1898IIP |
| 19745 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1898II |
| 19750 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1898II |
| 19755 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1970 | SPOR domain-containing protein | |||
| 1975 | M | DNA adenine methylase | GATC | M.Sen1898Dam |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 2465 | DUF2556 domain-containing protein | |||
| 2470 | M | adenine-specific DNA-methyltransferase | ATGCAT | M.Sen1898III |
| 2475 | Fis family transcriptional regulator | |||
| 9365 | phosphohydrolase | |||
| 9370 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1898DcmP |
| 9375 | V | V.StyUK1DcmP (100% identity) | V.Sen1898DcmP | |
| 9380 | amino acid exporter | |||
| 19905 | DNA repair protein | |||
| 19910 | RM | StyUK1IV (100% identity) | GATCAG | Sen1898IV |
| 19915 | 363 aa hypothetical protein | |||
| plasmid pSTY1-1898 | ||||
| 23690 | 300 aa hypothetical protein | |||
| 23695 | M | M.StyR64ORFAP (100% identity) | M.Sen1898ORF23695P | |
| 23700 | 73 aa hypothetical protein | |||
| plasmid pSTY2-1898 | ||||
| 25865 | 0 aa hypothetical protein | |||
| 23310 | M | M.StyUK1ORFAP (100% identity) | M.Sen1898ORF23310P | |
| 23315 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17530 | cytochrome ubiquinol oxidase subunit I | |||
| 17540 | R | StyUK1IP (99% identity) | CAGAG | Sen1898IP |
| 17545 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1898I |
| 17550 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19730 | 95 aa hypothetical protein | |||
| 19735 | R | StyUK1MrrP (100% identity) | Sen1898Mrr2P | |
| 19740 | type I restriction-modification system | |||