Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1880 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1880 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
Complete sequence: 4,815,208 bp
GenBank #: CP014981
REBASE acronym: Sen1880
Org_num: 18899
All begin AW97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19990 | restriction endonuclease | |||
| 19995 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1880IIP |
| 20000 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1880II |
| 20005 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1880II |
| 20010 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1970 | cell division protein DamX | |||
| 1975 | M | DNA adenine methylase | GATC | M.Sen1880DamP |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 2465 | 54 aa hypothetical protein | |||
| 2470 | M | methyltransferase | ATGCAT | M.Sen1880III |
| 2475 | Fis family transcriptional regulator | |||
| 6370 | 221 aa hypothetical protein | |||
| 6375 | M | M.Sens29958ORF6205P (100% identity) | M.Sen1880ORF6375P | |
| 6380 | 217 aa hypothetical protein | |||
| 9610 | hydrolase | |||
| 9615 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1880Dcm |
| 9620 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen1880DcmP |
| 9625 | drug/metabolite exporter YedA | |||
| 20160 | DNA repair protein | |||
| 20165 | RM | StyUK1IV (100% identity) | GATCAG | Sen1880IV |
| 20170 | 363 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17785 | 33 aa hypothetical protein | |||
| 17790 | R | StyUK1IP (99% identity) | CAGAG | Sen1880IP |
| 17795 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1880I |
| 17800 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19985 | 95 aa hypothetical protein | |||
| 19990 | R | StyUK1MrrP (100% identity) | Sen1880Mrr2P | |
| 19995 | DEAD/DEAH box helicase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5850 | DNA polymerase III subunit epsilon | |||
| 5855 | M | M.Sens24219ORF5575P (100% identity) | GATC | M.Sen1880ORF5855P |
| 5860 | endonuclease | |||