Escherichia coli 28RC1 |
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Putative Escherichia coli 28RC1 RM systems
Ref: Baranzoni,G.M. et al. unpublished
REBASE ref # 22847
| Sequence length: | GenBank #: | |
| Chromosome: | 5,561,698 bp | CP015020 |
| plasmid p28RC1: | 81,401 bp | CP015021 |
REBASE acronym: EcoRC1
Org_num: 18751
All begin ARC77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18990 | 113 aa hypothetical protein | |||
| 18995 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoRC1ORF19000P |
| 19000 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoRC1ORF19000P |
| 19005 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoRC1ORF19000P |
| 19010 | 94 aa hypothetical protein | |||
| 26030 | metal-dependent hydrolase | |||
| 26035 | R | EcoNE122ORF17200P (100% identity) | EcoRC1ORF26055P | |
| 26040 | Appr-1-p processing protein | |||
| 26045 | 218 aa hypothetical protein | |||
| 26050 | S | S.Ecos1613ORF5225P (100% identity) | S.EcoRC1ORF26055P | |
| 26055 | M | M.Ecos1613ORF5225P (100% identity) | M.EcoRC1ORF26055P | |
| 26060 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3845 | 648 aa hypothetical protein | |||
| 3850 | M | M.EcoYB141ORF15470P (100% identity) | M.EcoRC1ORF3850P | |
| 3855 | TrmB family transcriptional regulator | |||
| 4125 | Shiga toxin subunit A | |||
| 4145 | M | M.EcoZ1836ORF11435P (100% identity) | M.EcoRC1ORF28375P | |
| 4150 | TrmB family transcriptional regulator | |||
| 4860 | drug/metabolite exporter YedA | |||
| 4865 | V | V.EcosPA8DcmP (100% identity) | V.EcoRC1DcmP | |
| 4870 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoRC1DcmP |
| 4875 | hydrolase | |||
| 5680 | protein ninE | |||
| 5685 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoRC1ORF5685P |
| 5690 | ninB protein | |||
| 12735 | Fis family transcriptional regulator | |||
| 12740 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoRC1ORF12740P |
| 12745 | 59 aa hypothetical protein | |||
| 13270 | ribulose-phosphate 3-epimerase | |||
| 13275 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRC1DamP |
| 13280 | cell division protein DamX | |||
| 17400 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoRC1ORFAP | |
| 17415 | Eae protein | |||
| 18705 | helicase | |||
| 18710 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoRC1ORF18710P |
| 28025 | TrmB family transcriptional regulator | |||
| 28030 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoRC1ORF28030P | |
| 28045 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| plasmid p28RC1 | ||||
| 28670 | 101 aa hypothetical protein | |||
| 28675 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoRC1ORF28675P | |
| 28680 | 73 aa hypothetical protein | |||