Ref: Xu,T. et al. unpublished

REBASE ref # 21717

Complete sequence: 6,520,772 bp

GenBank #: CP013008

REBASE acronym: AplYZ

Org_num: 18497

 

All begin AP285_

Type I
ORF Gene Most similar Specificity Name
 
2800 anthranilate phosphoribosyltransferase
2805 R SplZORFAP (100% identity) AplYZORF2805P
2810 244 aa hypothetical protein
 
2815 chromosome segregation protein SMC
2820 S S.SplZORFAP (100% identity) S.AplYZORF2825P
2825 M M.SplZORFAP (98% identity) M.AplYZORF2825P
2830 peptidase S1
 
3875 62 aa hypothetical protein
3880 M DNA methyltransferase M.AplYZORF3880P
3885 321 aa hypothetical protein
 
4700 1,4-dihydroxy-2-naphthoate phytyltransferase
4705 M M.SplZORFTP (99% identity) M.AplYZORF4705P
4710 S S.SplZORFTP (99% identity) S.AplYZORF4705P
4715 methyltransferase
4720 203 aa hypothetical protein
4725 190 aa hypothetical protein
4730 R SplZORFFP (99% identity) AplYZORF4705P
4735 metal-dependent hydrolase
 
14285 232 aa hypothetical protein
14290 M M.SplZORFCP (100% identity) M.AplYZORF14290P
14295 S S.SplZORFCP (100% identity) S.AplYZORF14290P
14300 R Asp9108ORF15455P (100% identity) AplYZORF14290P
14305 mannosyltransferase
 
17410 472 aa hypothetical protein
17415 R Asp9108ORF19130P (100% identity) AplYZORF17435P
17420 99 aa hypothetical protein
17425 twitching motility protein PilT
17430 S S.Asp9108ORF19130P (100% identity) S.AplYZORF17435P
17435 M M.SplZORFBP (100% identity) M.AplYZORF17435P
17440 transcriptional regulator
 
17455 transposase
17460 R Asp9108ORF19150P (87% identity) AplYZORF17460P
17465 76 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
1445 DNA repair protein RecO
??? R Asp9108ORF1515P (100% identity) GRCGYC AplYZORF1455P
1455 M M.SplZORFNP (100% identity) GRCGYC M.AplYZORF1455P
1460 ATPase
 
2550 98 aa hypothetical protein
2555 R Asp9108ORF2700P (100% identity) CCGCGG AplYZORF2560P
??? M M.AplPORF27965P (100% identity) CCGCGG M.AplYZORF2560P
2565 pseudogene
 
2570 transposase
2575 RM AmaCSORF707P (98% identity) AplYZORF2575P
2580 143 aa hypothetical protein
 
3070 helicase
3075 RM Asp9108ORF3245P (99% identity) AplYZORF3075P
3080 DNA polymerase III subunit beta
 
3860 pseudogene
3865 M M.SplZORFDP (100% identity) CGTACG M.AplYZORF3865P
3870 R SplZORFDP (95% identity) CGTACG AplYZORF3865P
3875 62 aa hypothetical protein
 
4135 16S rRNA methyltransferase
??? M M.Asp9108ORF4400P (100% identity) TACGTA M.AplYZORF4140P
4150 R Asp9108ORF4400P (100% identity) TACGTA AplYZORF4140P
4155 C C.Asp9108ORF4400P (100% identity) C.AplYZORF4140P
4160 poly(A) polymerase
 
4710 418 aa hypothetical protein
4715 M M.SplZORFUP (100% identity) CCTNAGG M.AplYZORF4715P
4720 203 aa hypothetical protein
 
10810 392 aa hypothetical protein
10815 RM AplPORF16010P (49% identity) AplYZORF10815BP
10820 RM Asp9108ORF11845P (100% identity) AplYZORF10815AP
10825 two-component system response regulator
 
13540 glutathione S-transferase
13545 M M.Asp9108ORF14670P (100% identity) GGTNACC M.AplYZORFBP
??? R Asp9108ORF14670P (100% identity) GGTNACC AplYZORFBP
13555 high light inducible protein
 
13980 RIP metalloprotease RseP
13990 M M.SplZORFMP (100% identity) GCSGC M.AplYZORF13990P
13995 3-oxoacyl-ACP synthase
 
14070 91 aa hypothetical protein
14075 M M.Asp9108ORF15215P (100% identity) M.AplYZORF14075P
14080 142 aa hypothetical protein
 
14510 hemolysin
14515 M M.SplZORFLP (96% identity) CGATCG M.AplYZORF14515P
14520 allophycocyanin
 
15515 273 aa hypothetical protein
15520 M M.Asp9108ORF16900P (100% identity) GGYRCC M.AplYZORF15520P
15525 R Asp9108ORF16900P (100% identity) GGYRCC AplYZORF15520P
15530 cobalamin biosynthesis protein CobW
 
16140 recombinase
16145 M M.Asp9108ORF17565P (100% identity) M.AplYZORF16145P
16150 84 aa hypothetical protein
 
18630 LOR/SDH bifunctional protein
18635 M M.SplZORFGP (100% identity) GCTNAGC M.AplYZORF18635P
18640 R Asp9108ORF20455P (100% identity) GCTNAGC AplYZORF18635P
18645 ABC transporter permease
 
18805 228 aa hypothetical protein
18810 RM Asp9108ORF20650P (100% identity) AplYZORF18810P
18815 HNH endonuclease
 
18900 265 aa hypothetical protein
18905 R Asp9108ORF20760P (100% identity) CTGCAG AplYZORF18910P
18910 M M.SplZORFOP (100% identity) CTGCAG M.AplYZORF18910P
18915 UDP-N-acetylglucosamine 2-epimerase
 
19035 S-adenosylmethionine decarboxylase proenzyme
19040 M M.Asp9108ORF20865P (100% identity) GATC M.AplYZORF19040P
19045 group II intron reverse transcriptase/maturase
 
19800 130 aa hypothetical protein
19805 C C.AplPORF29535P (100% identity) C.AplYZORF19815P
19810 R Asp9108ORF21810P (100% identity) RCATGY AplYZORF19815P
19815 M M.Asp9108ORF21810P (100% identity) RCATGY M.AplYZORF19815P
19820 carbamoyl phosphate synthase large subunit
 
21890 M M.Asp9108ORF24165P (100% identity) M.AplYZORF21890P
21895 AAA+ family ATPase
 
22245 restriction endonuclease
22250 M M.Asp9108ORF24525P (96% identity) GACNNNGTC M.AplYZORF22250P
??? R Lfu8579ORF7000P (20% identity) GACNNNGTC AplYZORF22250P
22255 MBL fold metallo-hydrolase
 
23195 alcohol dehydrogenase
23200 M M.Asp9108ORF25595P (100% identity) GGWCC M.AplYZORF23200P
23205 guanine permease
 
24845 recombinase
24850 M M.Asp9108ORF27410P (100% identity) M.AplYZORF24850P
24855 84 aa hypothetical protein
 
25125 86 aa hypothetical protein
25130 R Asp9108ORF27710P (100% identity) ACCGGT AplYZORF25135P
25135 M M.Asp9108ORF27710P (100% identity) ACCGGT M.AplYZORF25135P
25140 pseudogene
 
25825 pseudogene
25830 M M.SplZORFKP (100% identity) M.AplYZORF25830P
25835 359 aa hypothetical protein
 
26465 81 aa hypothetical protein
??? RM Asp9108ORF29055P (100% identity) AplYZORF26475P
26480 116 aa hypothetical protein
 
26465 81 aa hypothetical protein
??? RM Asp9108ORF29055P (100% identity) AplYZORFAP
26480 116 aa hypothetical protein
 
26590 recombinase
26595 M M.Asp9108ORF29180P (100% identity) M.AplYZORF26595P
26600 102 aa hypothetical protein
 
27965 cysteine lyase
27970 M M.SplZORFRP (100% identity) ATGCAT M.AplYZORF27970P
27975 R SplZORFRP (100% identity) ATGCAT AplYZORF27970P
27980 phosphoribosyltransferase
 
28310 84 aa hypothetical protein
28315 M M.Asp9108ORF31020P (99% identity) M.AplYZORF28315P
 
28520 175 aa hypothetical protein
28525 M M.AplPORF18860P (100% identity) TTCGAA M.AplYZORF28525P
28530 R Asp9108ORF31225P (100% identity) TTCGAA AplYZORF28525P
28535 346 aa hypothetical protein
 
29435 asparagine synthase
29440 M M.Asp9108DndDP (100% identity) M.AplYZDndDP
29445 sulfurtransferase DndC
 
29440 DNA sulfur modification protein DndD
29445 M M.Asp9108DndCP (100% identity) M.AplYZDndCP
29450 526 aa hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
22240 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
22245 R Asp9108MrrP (100% identity) AplYZMrrP
22250 DNA methylase
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