Chloroflexus species Y-400-fl |
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Putative Chloroflexus species Y-400-fl RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 10930
Complete sequence: 5,268,950 bp
GenBank #: CP001364 (NC_012032)
REBASE acronym: CspY
Org_num: 5304
All begin Chy400_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1957 | protein of unknown function DUF224 cysteine-rich | |||
| 1958 | M | M.CauJORF1810P (100% identity) | M.CspYORF1958P | |
| 1959 | protein of unknown function DUF955 | |||
| 1960 | 165 aa conserved hypothetical protein | |||
| 1961 | S | S.CauJORF1810P (99% identity) | S.CspYORF1958P | |
| 1962 | 356 aa conserved hypothetical protein | |||
| 1963 | 300 aa conserved hypothetical protein | |||
| 1964 | R | CauJORF1810P (100% identity) | CspYORF1958P | |
| 1965 | CBS domain containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 78 | polysaccharide biosynthesis protein | |||
| 79 | M | M.CauJORF75P (100% identity) | M.CspYORF79P | |
| 80 | 375 aa conserved hypothetical protein | |||
| 344 | flavodoxin | |||
| 345 | R | CauJORF322P (100% identity) | TCTAGA | CspYORF346P |
| 346 | M | M.CauJORF322P (100% identity) | TCTAGA | M.CspYORF346P |
| 347 | ABC transporter related | |||
| 712 | 307 aa conserved hypothetical protein | |||
| 713 | M | M.CauJORF658P (100% identity) | TCCGGA | M.CspYORF713P |
| 714 | R | CauJORF658P (100% identity) | TCCGGA | CspYORF713P |
| 715 | two component transcriptional regulator, LuxR | |||
| 780 | 1193 aa conserved hypothetical protein | |||
| 781 | M | M.CauJORF721P (100% identity) | M.CspYORF781P | |
| 782 | 664 aa conserved hypothetical protein | |||
| 898 | 114 aa conserved hypothetical protein | |||
| 899 | R | CauJORF833P (100% identity) | GTCGAC | CspYORF900P |
| 900 | M | M.CauJORF833P (100% identity) | GTCGAC | M.CspYORF900P |
| 901 | NB-ARC domain protein | |||
| 908 | helicase domain protein | |||
| 909 | RM | CauJORF841P (100% identity) | CspYORF909P | |
| 910 | 187 aa hypothetical protein | |||
| 936 | 217 aa conserved hypothetical protein | |||
| 937 | M | RNA methylase | GGATG | M.CspYORF937P |
| 938 | carbamoyl-phosphate synthase, small subunit | |||
| 1076 | glycosyl transferase family 2 | |||
| 1077 | M | M.CauJORF986P (100% identity) | M.CspYORF1077P | |
| 1078 | phage SPO1 DNA polymerase-related protein | |||
| 1260 | AAA ATPase | |||
| 1261 | M | M.CauJORF1151P (100% identity) | GATC | M.CspYORF1261P |
| 1262 | ABC transporter related | |||
| 1360 | DNA gyrase, A subunit | |||
| 1361 | M | M.CauJORF1242P (100% identity) | RGATCY | M.CspYORF1361P |
| 1362 | R | CauJORF1242P (100% identity) | RGATCY | CspYORF1361P |
| 1827 | pentapeptide repeat protein | |||
| ??? | R | CauJORF1687P (100% identity) | CTGCAG | CspYORF1828P |
| ??? | M | M.CauJORF1687P (100% identity) | CTGCAG | M.CspYORF1828P |
| 1829 | excinuclease ABC, A subunit | |||
| 1864 | 58 aa hypothetical protein | |||
| 1865 | M | M.CauJORF1721P (97% identity) | M.CspYORF1865P | |
| 1866 | 152 aa conserved hypothetical protein | |||
| 2029 | glycosyl transferase group 1 | |||
| 2030 | M | M.CauJORF1879P (100% identity) | GANTC | M.CspYORF2030P |
| 2031 | 4Fe-4S ferredoxin iron-sulfur binding domain | |||
| 2725 | 158 aa conserved hypothetical protein | |||
| 2726 | R | CauJORF2526P (98% identity) | CspYORF2727P | |
| 2727 | M | M.CauJORF2526P (100% identity) | M.CspYORF2727P | |
| 2728 | UspA domain protein | |||
| 2917 | helicase domain protein | |||
| 2918 | M | M.CauJORF2700P (100% identity) | M.CspYORF2918P | |
| 2919 | 466 aa conserved hypothetical protein | |||
| 3071 | lipoate-protein ligase B | |||
| 3072 | M | M.CauJORF2836P (100% identity) | TTCGAA | M.CspYORF3072P |
| 3073 | Carboxymuconolactone decarboxylase | |||
| 3159 | helix-hairpin-helix motif protein | |||
| 3160 | M | M.CauJORF2921P (100% identity) | M.CspYORF3160P | |
| 3161 | 206 aa conserved hypothetical protein | |||
| 3409 | WD-40 repeat protein | |||
| ??? | R | CauJORF3159P (100% identity) | CAGCTG | CspYORF3411P |
| 3411 | M | M.CauJORF3159P (100% identity) | CAGCTG | M.CspYORF3411P |
| 3412 | Sua5/YciO/YrdC/YwlC family protein | |||
| 3613 | Phosphoglycerate mutase | |||
| 3614 | M | M.CauJORF3352P (100% identity) | GATATC | M.CspYORF3614P |
| 3615 | R | CauJORF3352P (100% identity) | GATATC | CspYORF3614P |
| 3616 | 395 aa conserved hypothetical protein | |||
| 3713 | ABC transporter related | |||
| 3714 | R | CauJORF3451P (100% identity) | CCTNAGG | CspYORF3716P |
| 3715 | 59 aa hypothetical protein | |||
| 3716 | M | M.CauJORF3451P (100% identity) | CCTNAGG | M.CspYORF3716P |
| 3717 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 3910 | 215 aa conserved hypothetical protein | |||
| 3911 | M | DNA adenine methylase | GATATC | M.CspYORF3911P |
| 3912 | transposase IS5-like protein | |||
| 3925 | inner-membrane translocator | |||
| 3926 | M | M.CauJORF3639P (100% identity) | GACGTC | M.CspYORF3926P |
| 3927 | 3-hydroxyisobutyrate dehydrogenase-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1998 | amidohydrolase | |||
| 1999 | R | CauJMrr2P (97% identity) | CspYMrr2P | |
| 2000 | 57 aa hypothetical protein | |||