Escherichia coli JJ1887 |
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Putative Escherichia coli JJ1887 RM systems
Ref: Johnson,T.J. et al. unpublished
REBASE ref # 21958
| Sequence length: | GenBank #: | |
| Chromosome: | 5,081,061 bp | CP014316 |
| plasmid pJJ1887-4: | 107,507 bp | CP014321 |
REBASE acronym: Eco1887
Org_num: 18313
All begin AX202_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1510 | 156 aa hypothetical protein | |||
| 1515 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco1887ORF1520P |
| 1520 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco1887ORF1520P |
| 1525 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco1887ORF1520P |
| 1530 | 267 aa hypothetical protein | |||
| 25165 | 112 aa hypothetical protein | |||
| 25170 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Eco1887ORF25180P |
| 25175 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Eco1887ORF25180P |
| 25180 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Eco1887ORF25180P |
| 25185 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5065 | 71 aa hypothetical protein | |||
| 5070 | M | M.KpnYN1ORFGP (89% identity) | M.Eco1887ORF5070P | |
| 5075 | DNA-binding protein | |||
| 7380 | TrmB family transcriptional regulator | |||
| 7385 | M | M.EcosS9ORF10680P (100% identity) | M.Eco1887ORF7385P | |
| 7400 | 108 aa hypothetical protein | |||
| 10985 | drug/metabolite exporter YedA | |||
| 10990 | V | V.SflC32DcmP (74% identity) | V.Eco1887DcmP | |
| 10995 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco1887DcmP |
| 11000 | hydrolase | |||
| 14945 | holin | |||
| 14950 | M | M.Sso63633ORF22290P (100% identity) | M.Eco1887ORF14950P | |
| 14955 | 67 aa hypothetical protein | |||
| 14985 | LexA family transcriptional regulator | |||
| 14990 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco1887ORF14990P |
| 14995 | 162 aa hypothetical protein | |||
| 15065 | AAA family ATPase | |||
| 15070 | M | M.Ecoi64ORF2425P (100% identity) | M.Eco1887ORF15070P | |
| 15075 | carbon starvation induced protein | |||
| 18920 | Fis family transcriptional regulator | |||
| 18925 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco1887ORF18925P |
| 18930 | 59 aa hypothetical protein | |||
| 19530 | ribulose phosphate epimerase | |||
| 19535 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco1887DamP |
| 19540 | cell division protein DamX | |||
| 24800 | transposase | |||
| 24805 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.Eco1887ORF24805P |
| 24810 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco1887ORF24805P |
| 24815 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco1887ORF24805P |
| 24820 | restriction endonuclease | |||
| plasmid pJJ1887-4 | ||||
| 26795 | 103 aa hypothetical protein | |||
| 26800 | M | M.UbapRSB107ORFAP (100% identity) | M.Eco1887ORF26800P | |
| 26805 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24815 | restriction endonuclease | |||
| 24820 | R | EcosS9McrCP (100% identity) | Eco1887McrCP | |
| 24825 | R | EcosS3McrBP (100% identity) | Eco1887McrBP | |
| 24830 | glycosyl transferase | |||