Escherichia coli IAI39 |
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Putative Escherichia coli IAI39 RM systems
Ref: Genoscope -,C.E.A. unpublished
REBASE ref # 10128
Complete sequence: 5,132,068 bp
GenBank #: CU928164 (NC_011750)
REBASE acronym: EcoIAI39
Org_num: 5275
All begin ECIAI39_, ECIAI39_misc_RNA_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4816 | 113 aa conserved hypothetical protein | |||
| 4817 | S | S.EcoSP5ORF2185P (100% identity) | CAAYNNNNNNNNTGAG | S.EcoIAI39ORF4818P |
| 4818 | M | M.SflTORF4636P (100% identity) | CAAYNNNNNNNNTGAG | M.EcoIAI39ORF4818P |
| 4819 | R | EcosLF82ORF3455P (100% identity) | CAAYNNNNNNNNTGAG | EcoIAI39ORF4818P |
| 4820 | 155 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1094 | metal-dependent phosphohydrolase | |||
| 1095 | M | M.Eco1093DcmP (100% identity) | CCWGG | M.EcoIAI39DcmP |
| 1096 | V | V.SflC32DcmP (74% identity) | V.EcoIAI39DcmP | |
| 1097 | 306 aa conserved hypothetical protein; putative inner | |||
| 2702 | transcriptional activator from phage | |||
| 2703 | M | M.EcoEC361ORF21920P (99% identity) | GATC | M.EcoIAI39ORF2703P |
| 2704 | integrase | |||
| 63 | pseudogene | |||
| 2824 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoIAI39ORF2825P |
| 2825 | M | M.EcoS7438ORFHP (100% identity) | CCWGG | M.EcoIAI39ORF2825P |
| 2826 | 274 aa conserved hypothetical protein | |||
| 3761 | global DNA-binding transcriptional dual | |||
| 3762 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.EcoIAI39ORF3762P |
| 3763 | 59 aa conserved hypothetical protein; putative | |||
| 3864 | D-ribulose-5-phosphate 3-epimerase | |||
| 3865 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoIAI39DamP |
| 3866 | 428 aa conserved hypothetical protein | |||
| 4862 | replication protein from phage | |||
| 4863 | M | M.EcoS6995ORFGP (100% identity) | GATC | M.EcoIAI39ORF4863P |
| 4864 | LexA repressor | |||
| 4872 | transposase | |||
| 4873 | M | M.Kpn13687ORF1808P (98% identity) | M.EcoIAI39ORF4873P | |
| 4874 | phage lysis protein S; DLP12 prophage | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4775 | transposase ORF A, IS629 | |||
| 4776 | R | EcoSP5McrCP (75% identity) | EcoIAI39McrCP | |
| ??? | R | EcoSP5McrBP (100% identity) | EcoIAI39McrBP | |
| 4779 | 309 aa conserved hypothetical protein; putative | |||