Clostridium perfringens JP55 |
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Putative Clostridium perfringens JP55 RM systems
Ref: Mehdizadeh Gohari,I. et al. PLoS ONE 11 (2), E0148344 (2016)
REBASE ref # 21471
| Sequence length: | GenBank #: | |
| Chromosome: | 3,347,300 bp | CP010993 |
| plasmid pJFP55F: | 72,549 bp | CP013041 |
| plasmid pJFP55G: | 36,664 bp | CP013042 |
REBASE acronym: CpeJP55
Org_num: 18173
All begin JFP55_, JFP55_pF, JFP55_pG
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3225 | 201 aa hypothetical protein | |||
| 3230 | M | M.Cpe11ORF3390P (100% identity) | M.CpeJP55ORF3230P | |
| 3235 | S | S.Cpe11ORF3390P (100% identity) | S.CpeJP55ORF3230P | |
| 3240 | 92 aa hypothetical protein | |||
| 3245 | 301 aa hypothetical protein | |||
| 3250 | EcsC family protein | |||
| 3255 | R | Cpe11ORF3390P (99% identity) | CpeJP55ORF3230P | |
| 3260 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4020 | 373 aa hypothetical protein | |||
| 4025 | M | M.CpeNE18ORF3915P (100% identity) | ACGGC | M.CpeJP55ORF4025P |
| 4030 | plasmid partitioning protein ParB | |||
| 14690 | methionine sulfoxide reductase A | |||
| 14695 | M | M.CpeQHY2ORF14995P (100% identity) | GTATAC | M.CpeJP55ORF14695P |
| 14700 | phage infection protein | |||
| 14800 | 104 aa hypothetical protein | |||
| 14805 | M | M.CpeML2ORF14945P (100% identity) | GGCC | M.CpeJP55ORF14805P |
| 14810 | R | R2.Ssp703SORF5925P (27% identity) | GGCC | CpeJP55ORF14805P |
| 14815 | ribosomal RNA large subunit methyltransferase H | |||
| plasmid pJFP55F | ||||
| 22 | 72 aa hypothetical protein | |||
| 23 | M | M.Cpe11ORF16220P (100% identity) | M.CpeJP55ORF23P | |
| 24 | 94 aa hypothetical protein | |||
| 39 | 101 aa hypothetical protein | |||
| 40 | M | M.CpeENE18ORF16650P (98% identity) | M.CpeJP55ORF40P | |
| 41 | 57 aa hypothetical protein | |||
| plasmid pJFP55G | ||||
| 38 | 57 aa hypothetical protein | |||
| 39 | M | M.CpeJJCORFEP (100% identity) | M.CpeJP55ORF39P | |
| 40 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5510 | membrane protein | |||
| 5515 | R | CpeML2McrBP (100% identity) | CpeJP55McrBP | |
| 5520 | R | Cpe11McrCP (100% identity) | CpeJP55McrCP | |
| 5525 | membrane protein | |||