Clostridium perfringens JP838 |
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Putative Clostridium perfringens JP838 RM systems
Ref: Mehdizadeh Gohari,I. et al. PLoS ONE 11 (2), E0148344 (2016)
REBASE ref # 21471
| Sequence length: | GenBank #: | |
| Chromosome: | 3,530,414 bp | CP010994 |
| plasmid pJFP838A: | 404,393 bp | CP013615 |
| plasmid pJFP838C: | 72,750 bp | CP013040 |
| plasmid pJFP838D: | 48,597 bp | CP013039 |
| plasmid pJP838B: | 66,958 bp | KT020842 |
REBASE acronym: Cpe838
Org_num: 18174
All begin JFP838_, JFP838_pA, JFP838_pB, JFP838_pC, JFP838_pD
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5265 | 143 aa hypothetical protein | |||
| 5270 | M | M.Cpe48ORF8250P (100% identity) | M.Cpe838ORF5270P | |
| 5275 | 332 aa hypothetical protein | |||
| 6795 | holin | |||
| 6800 | M | M.Cpe211ORF7150P (100% identity) | M.Cpe838ORF6800P | |
| 6805 | N-acetylmuramoyl-L-alanine amidase | |||
| 15475 | methionine sulfoxide reductase A | |||
| 15480 | M | M.Cpe88ORF14710P (100% identity) | GTATAC | M.Cpe838ORF15480P |
| 15485 | phage infection protein | |||
| 15590 | 104 aa hypothetical protein | |||
| 15595 | M | M.Cpe211ORF15885P (32% identity) | GTCTC | M.Cpe838ORF15595P |
| 15600 | R | Cpe211ORF15885P (95% identity) | GTCTC | Cpe838ORF15595P |
| 15605 | 314 aa hypothetical protein | |||
| plasmid pJFP838A | ||||
| 22 | 136 aa hypothetical protein | |||
| 23 | M | M.Bth407ORF55760P (54% identity) | M.Cpe838ORF23P | |
| 24 | 73 aa hypothetical protein | |||
| 179 | 41 aa hypothetical protein | |||
| 180 | M | M.EalEA1ORF11595P (38% identity) | ATGCAT | M.Cpe838ORF180P |
| 181 | leucine-rich cell surface protein | |||
| 312 | 361 aa hypothetical protein | |||
| 313 | M | M.BspQORFDP (56% identity) | M.Cpe838ORF313P | |
| 314 | 39 aa hypothetical protein | |||
| 395 | 250 aa hypothetical protein | |||
| 396 | M | M.PspC3ORF13535P (63% identity) | GATC | M.Cpe838ORF396P |
| 397 | 256 aa hypothetical protein | |||
| 476 | cytosine-specific methyltransferase | |||
| 477 | M | M.Tme16806ORFBP (42% identity) | CTSAG | M.Cpe838ORF477P |
| 478 | tRNA-His guanylyltransferase | |||
| plasmid pJFP838C | ||||
| 23 | 72 aa hypothetical protein | |||
| 24 | M | M.Cpe211ORF16470P (99% identity) | M.Cpe838ORF24P | |
| 25 | 94 aa hypothetical protein | |||
| 41 | 101 aa hypothetical protein | |||
| 42 | M | M.CpeJP55ORF39P (57% identity) | M.Cpe838ORF42P | |
| 43 | 57 aa hypothetical protein | |||
| plasmid pJFP838D | ||||
| 3 | 94 aa hypothetical protein | |||
| 4 | M | M.Cpe751ORF15175P (100% identity) | M.Cpe838ORF4P | |
| 5 | 72 aa hypothetical protein | |||
| 47 | 57 aa hypothetical protein | |||
| 48 | M | M.CpeF5603ORFBP (100% identity) | M.Cpe838ORF48P | |
| 49 | 101 aa hypothetical protein | |||
| plasmid pJP838B | ||||
| 43 | 72 aa hypothetical protein | |||
| 44 | M | M.CpeF5603ORFAP (100% identity) | M.Cpe838ORF44P | |
| 45 | 94 aa hypothetical protein | |||
| 61 | 101 aa hypothetical protein | |||
| 62 | M | M.CpeJP55ORF39P (92% identity) | M.Cpe838ORF62P | |
| 63 | 57 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5350 | membrane protein | |||
| 5355 | R | Cpe211McrBP (100% identity) | Cpe838McrBP | |
| 5360 | R | Cpe211McrCP (100% identity) | Cpe838McrCP | |
| 5365 | membrane protein | |||