Salmonella enterica subsp. enterica serovar Typhimurium SO3 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SO3 RM systems
Ref: Silva,C. et al. unpublished
REBASE ref # 22005
Complete sequence: 4,912,959 bp
GenBank #: CP014536
REBASE acronym: SenSO3
Org_num: 18341
All begin SE18cs_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4800 | endoribonuclease SymE | |||
| 4802 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSO3ORF4803P |
| 4803 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSO3ORF4803P |
| 4804 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSO3ORF4803P |
| 4805 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2065 | inner membrane transporter yedA | |||
| 2066 | V | V.StyUK1DcmP (100% identity) | V.SenSO3DcmP | |
| 2067 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSO3DcmP |
| 2068 | hydrolase | |||
| 2114 | Crossover junction endodeoxyribonuclease RusA | |||
| 2115 | M | M.StyUK1V (100% identity) | GATC | M.SenSO3ORF2115P |
| 2116 | phage protein | |||
| 2896 | endonuclease | |||
| 2897 | M | M.SspA39ORFGP (100% identity) | GATC | M.SenSO3ORF2897P |
| 2898 | RNA polymerase-binding protein DksA | |||
| 3588 | DNA-binding protein Fis | |||
| 3589 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSO3ORF3589P |
| 3590 | membrane protein | |||
| 3692 | ribulose-phosphate 3-epimerase | |||
| 3693 | M | M.StyTDamP (100% identity) | GATC | M.SenSO3DamP |
| 3694 | DamX protein | |||
| 4767 | spermidine/putrescine ABC transporter ATPase | |||
| 4768 | RM | StyUK1IV (100% identity) | GATCAG | SenSO3ORF4768P |
| 4769 | DNA repair ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 434 | sialic acid transporter | |||
| 435 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSO3ORF435P |
| 436 | R | SenSO2ORF441P (100% identity) | CAGAG | SenSO3ORF435P |
| 437 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4804 | subunit R of type I restriction-modification | |||
| 4805 | R | StyUK1MrrP (100% identity) | SenSO3Mrr2P | |
| 4806 | 95 aa hypothetical protein | |||