Salmonella enterica subsp. enterica serovar Typhimurium YU15 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium YU15 RM systems
Ref: Silva,C. et al. unpublished
REBASE ref # 21890
| Sequence length: | GenBank #: | |
| Chromosome: | 4,933,574 bp | CP014358 |
| plasmid pYU15_94: | 94,075 bp | CP014359 |
REBASE acronym: SenYU15
Org_num: 18322
All begin SE16cs_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4837 | endoribonuclease SymE | |||
| 4839 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenYU15ORF4840P |
| 4840 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenYU15ORF4840P |
| 4841 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenYU15ORF4840P |
| 4842 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2139 | inner membrane transporter yedA | |||
| 2140 | V | V.StyUK1DcmP (100% identity) | V.SenYU15DcmP | |
| 2141 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenYU15DcmP |
| 2142 | hydrolase | |||
| 2188 | Crossover junction endodeoxyribonuclease RusA | |||
| 2189 | M | M.StyUK1V (100% identity) | GATC | M.SenYU15ORF2189P |
| 2190 | phage protein | |||
| 2863 | Crossover junction endodeoxyribonuclease RusA | |||
| ??? | M | M.Sty13348ORF110P (100% identity) | GATC | M.SenYU15ORFAP |
| 2866 | phage protein | |||
| 3620 | DNA-binding protein Fis | |||
| 3621 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenYU15ORF3621P |
| 3622 | membrane protein | |||
| 3723 | ribulose-phosphate 3-epimerase | |||
| 3724 | M | M.StyTDamP (100% identity) | GATC | M.SenYU15DamP |
| 3725 | DamX protein | |||
| 4804 | spermidine/putrescine ABC transporter ATPase | |||
| 4805 | RM | StyUK1IV (100% identity) | GATCAG | SenYU15ORF4805P |
| 4806 | DNA repair ATPase | |||
| plasmid pYU15_94 | ||||
| 4979 | cytoplasmic protein | |||
| 4980 | M | M.StyUK1ORFAP (100% identity) | M.SenYU15ORF4980P | |
| 4981 | yfcA protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 429 | sialic acid transporter | |||
| 430 | M | M.StyUK1I (100% identity) | CAGAG | M.SenYU15ORF430P |
| 431 | R | StyUK1IP (99% identity) | CAGAG | SenYU15ORF430P |
| 432 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4841 | subunit R of type I restriction-modification | |||
| 4842 | R | StyUK1MrrP (100% identity) | SenYU15Mrr2P | |
| 4843 | 95 aa hypothetical protein | |||