Lactobacillus plantarum 2025 |
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Putative Lactobacillus plantarum 2025 RM systems
Ref: Karlyshev,A.V. and Abramov,V.M. unpublished
REBASE ref # 21362
| Sequence length: | GenBank #: | |
| Chromosome: | 3,334,257 bp | AVFJ00000000 (NZ_AVFJ00000000) |
| Chromosome: | 3,188,928 bp | CP076824 |
| plasmid LP2025_2: | 55,926 bp | CP076826 |
| plasmid LP2025_7: | 11,590 bp | CP076831 |
REBASE acronym: Lpl2025
Org_num: 18121
All begin N876_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 213125 | RM | Lpl2025ORF16480BP (99% identity) | Lpl2025ORF213125BP | |
| 213130 | RM | Lpl2025ORF16480AP (100% identity) | Lpl2025ORF213125AP | |
| 213135 | 187 aa hypothetical protein | |||
| ??? | RM | LplBC015ORF4130P (92% identity) | Lpl2025ORF212845P | |
| 212850 | integrase | |||
| 215360 | pseudogene | |||
| 215365 | M | M.Lpl2025ORF15485P (100% identity) | GATC | M.Lpl2025ORF215365P |
| 212850 | integrase | |||
| 212855 | RM | LplBC015ORF4140P (93% identity) | Lpl2025ORF212855P | |
| 212860 | 838 aa hypothetical protein | |||
| 214180 | HNH nuclease | |||
| 214185 | M | M2.Lpl2025ORF5260P (100% identity) | CTSAG | M.Lpl2025ORF214185P |
| 214190 | 101 aa hypothetical protein | |||
| 202085 | pseudogene | |||
| 202090 | RM | LplX7021ORF3575P (100% identity) | Lpl2025ORF202090P | |
| 202095 | ATP-dependent helicase | |||
| Chromosome | ||||
| 2665 | 102 aa hypothetical protein | |||
| 2670 | M | M.LplL75aORFAP (98% identity) | M.Lpl2025ORF2670P | |
| 2675 | 100 aa hypothetical protein | |||
| 3980 | glutamine-hydrolyzing GMP synthase | |||
| 3985 | RM | LplX7021ORF3575P (100% identity) | Lpl2025ORF202090P | |
| 3990 | ATP-dependent helicase | |||
| 4155 | BREX system P-loop protein BrxC | |||
| 4160 | RM | LplBC015ORF4130P (100% identity) | Lpl2025ORF4160P | |
| 4165 | site-specific integrase | |||
| 4165 | site-specific integrase | |||
| 4170 | RM | LplBC015ORF4140P (100% identity) | Lpl2025ORF4170P | |
| 4175 | BREX-1 system phosphatase PglZ type A | |||
| 5255 | 176 aa hypothetical protein | |||
| 5260 | M | M.Tso35534ORF5255P (28% identity) | M1.Lpl2025ORF5260AP | |
| 5265 | IS30 family transposase | |||
| 5270 | M | M.Csp356ORF589P (19% identity) | M1.Lpl2025ORF5260BP | |
| 5275 | M | M.Lpl2025ORF214185P (100% identity) | M2.Lpl2025ORF5260P | |
| 5280 | HNH endonuclease | |||
| plasmid LP2025_2 | ||||
| 15480 | IS30-like element ISLpl1 family transposase | |||
| 15485 | M | M.Lpl2025ORF215365P (100% identity) | M.Lpl2025ORF15485P | |
| 15490 | recombinase family protein | |||
| plasmid LP2025_7 | ||||
| 16475 | DUF536 domain-containing protein | |||
| 16480 | RM | Lpl2025ORF213125AP (100% identity) | Lpl2025ORF16480AP | |
| 16485 | RM | Lpl2025ORF213125BP (99% identity) | Lpl2025ORF16480BP | |
| 16490 | type II toxin-antitoxin system PemK/MazF family | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 209500 | 430 aa hypothetical protein | |||
| 209505 | R | Lpl2025ORF15580P (100% identity) | Lpl2025ORF209510P | |
| 209510 | M | M.Lpl2025ORF15580P (88% identity) | M.Lpl2025ORF209510P | |
| 209515 | transposase | |||
| plasmid LP2025_2 | ||||
| 15570 | 430 aa hypothetical protein | |||
| 15575 | R | Lpl2025ORF209510P (100% identity) | Lpl2025ORF15580P | |
| 15580 | M | M.Lpl2025ORF209510P (88% identity) | M.Lpl2025ORF15580P | |
| 15585 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 207740 | transposase | |||
| 207745 | R | Lpr5300MrrP (100% identity) | Lpl2025MrrP | |
| 207750 | NADP oxidoreductase | |||
| Chromosome | ||||
| 8065 | helix-turn-helix domain-containing protein | |||
| 8070 | R | Lpr5300MrrP (100% identity) | Lpl2025MrrP | |
| 8075 | NAD(P)-binding domain-containing protein | |||