Escherichia coli UCD-JA38 |
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Putative Escherichia coli UCD-JA38 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,175,841 bp
GenBank #: LJYD00000000 (NZ_LJYD00000000)
REBASE acronym: EcoJA38
Org_num: 18050
All begin ORF_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10 | 123 aa hypothetical protein HMPREF1599_05834 | |||
| 14 | M | M.Sfl0030ORFCP (100% identity) | M.EcoJA38ORFHP | |
| 19 | 73 aa hypothetical protein | |||
| 28 | 124 aa hypothetical protein | |||
| 30 | M | M.SboBSORF1444P (100% identity) | M.EcoJA38ORFEP | |
| 32 | ARAC-type regulatory protein, partial | |||
| 13 | 198 aa hypothetical protein | |||
| 14 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoJA38ORFDP |
| 15 | histidine kinase | |||
| 25 | 115 aa conserved hypothetical protein | |||
| 28 | M | M.EcoleORFAP (100% identity) | GATC | M.EcoJA38ORFCP |
| 31 | recombination protein ninB from phage origin | |||
| 23 | membrane protein | |||
| 24 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoJA38ORFBP |
| 27 | DNA-binding protein fis | |||
| 109 | ribulose-phosphate 3-epimerase | |||
| 110 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA38DamP |
| 113 | cell division protein DamX | |||
| 154 | restriction endonuclease | |||
| 155 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoJA38ORFGP |
| 156 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoJA38ORFGP |
| 157 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoJA38ORFGP |
| 158 | 357 aa hypothetical protein ESAG_03900 | |||
| 316 | 73 aa hypothetical protein | |||
| 318 | M | M.Sso866ORF27155P (100% identity) | M.EcoJA38ORFFP | |
| 323 | Uncharacterised protein | |||
| 1068 | multidrug DMT transporter | |||
| ??? | V | V.EcosC25DcmP (100% identity) | CCWGG | V.EcoJA38DcmP |
| 1073 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoJA38DcmP |
| 1075 | 216 aa Hypothetical protein yedJ | |||
| 1960 | 65 aa hypothetical protein ECDEC9E_3556 | |||
| 1962 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoJA38ORFAP |
| 1966 | LexA repressor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 152 | 63 aa hypothetical protein | |||
| 153 | R | EcosS3McrBP (100% identity) | EcoJA38McrBP | |
| 154 | R | EcosS9McrCP (100% identity) | EcoJA38McrCP | |
| 155 | restriction endonuclease | |||
| 2065 | resolvase protein, partial | |||
| 2066 | R | EcoW224NGmrSDP (100% identity) | EcoJA38GmrSDP | |
| 2067 | 65 aa hypothetical protein | |||