Helicobacter pylori P12 |
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Putative Helicobacter pylori P12 RM systems
Ref: Fischer,W. et al. unpublished
REBASE ref # 10797
Complete sequence: 1,673,813 bp
GenBank #: CP001217 (NC_011498)
REBASE acronym: HpyP
Org_num: 5180
All begin HPP12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 433 | polyphosphate kinase | |||
| 434 | S | S.HpyP12ORF2220P (100% identity) | S.HpyPORF435P | |
| 435 | M | M.HpyP12ORF2220P (100% identity) | M.HpyPORF435P | |
| 436 | R | restriction endonuclease subunit R | HpyPORF435P | |
| 437 | integrase/recombinase XercD family | |||
| 473 | 259 aa hypothetical protein | |||
| ??? | R | restriction endonuclease subunit R | HpyPORF473AP | |
| 474 | 631 aa hypothetical protein | |||
| 796 | outer membrane protein HofF | |||
| 797 | S | S.HpyP12V (100% identity) | GAANNNNNNNNTAG | S.HpyPXI |
| 798 | cadmium-transporting ATPase | |||
| 848 | 245 aa hypothetical protein | |||
| 849 | S | S.Hpyfe118ORF3210P (42% identity) | S.HpyPORF850P | |
| 850 | M | M.HpyP12ORF4310P (100% identity) | M.HpyPORF850P | |
| 851 | integral membrane protein | |||
| 1507 | thymidylate synthase | |||
| 1508 | S | S.HpyP12VIII (99% identity) | GRNAANNNNNNNTAYC | S.HpyPX |
| 1509 | M | M.HpyP12VIII (100% identity) | GRNAANNNNNNNTAYC | M.HpyPX |
| 1510 | R | HpyP12VIIIP (99% identity) | GRNAANNNNNNNTAYC | HpyPXP |
| 1511 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 43 | peptidylarginine deiminase domain-containing | |||
| 44 | M | M1.HpyP12III (100% identity) | CCTC | M1.HpyPVI |
| 45 | M | M2.HpyP12III (100% identity) | CCTC | M2.HpyPVIP |
| 46 | R | HpyP12IIIP (100% identity) | CCTC | HpyPVIP |
| 47 | type II R-M system restriction endonuclease | |||
| 46 | restriction endonuclease | |||
| 47 | R | HpyP12IVP (100% identity) | CCTTC | HpyPVP |
| 48 | M | M.HpyP12IV (100% identity) | CCTTC | M.HpyPV |
| 49 | sodium/proline symporter | |||
| 93 | malonyl coenzyme A-acyl carrier protein | |||
| 94 | R | type II R-M system restriction endonuclease | GATC | HpyPIIIP |
| 95 | M | M.HpyP12VII (100% identity) | GATC | M.HpyPIII |
| 96 | alpha-1,2-fucosyltransferase | |||
| 258 | exonuclease VII large subunit | |||
| 259 | M | M.HpyP12ORF1320P (100% identity) | TCGA | M.HpyPORF259P |
| 260 | 80 aa hypothetical protein | |||
| 260 | 80 aa hypothetical protein | |||
| 261 | R | HpyGORF242P (81% identity) | CCGG | HpyPORF262P |
| 262 | M | M.HpyP12ORF1335P (100% identity) | CCGG | M.HpyPORF262P |
| 263 | ATP-dependent protease binding subunit | |||
| 487 | outer membrane protein HopJ | |||
| 488 | M | M.HpyP12II (100% identity) | ATTAAT | M.HpyPVII |
| 489 | DD-heptosyltransferase | |||
| 490 | GTP-binding protein of the TypA subfamily | |||
| 491 | M | M.HpyP12ORF2520P (86% identity) | ACGT | M.HpyPORF491P |
| 492 | catalase like protein | |||
| 509 | DNA gyrase subunit B | |||
| 510 | M | M.HpyP12IX (100% identity) | GTAC | M.HpyPIV |
| 511 | R | HpyP12IXP (100% identity) | GTAC | HpyPIVP |
| 512 | outer membrane protein | |||
| 679 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyP12ORF3460P (100% identity) | HpyPORF680P | |
| 683 | 449 aa hypothetical protein | |||
| 906 | flagellar hook protein | |||
| 907 | R | HpyP12ORF4590P (100% identity) | GTNNAC | HpyPORF908P |
| 908 | M | M.HpyP12ORF4590P (100% identity) | GTNNAC | M.HpyPORF908P |
| 909 | Rep helicase | |||
| 1051 | biotin carboxylase | |||
| 1052 | M | M.HpyP12X (100% identity) | TCNNGA | M.HpyPVIII |
| 1053 | R | HpyP12XP (99% identity) | TCNNGA | HpyPVIIIP |
| 1054 | 199 aa hypothetical protein | |||
| 1085 | 144 aa hypothetical protein | |||
| 1086 | R | HpyP12XIP (100% identity) | GCGC | HpyPXIIP |
| 1087 | M | M.HpyP12XI (98% identity) | GCGC | M.HpyPXII |
| 1088 | FlgM protein | |||
| 1172 | 222 aa hypothetical protein | |||
| 1173 | M | M.HpyP12I (100% identity) | CATG | M.HpyPI |
| ??? | R | HpyP12IP (100% identity) | CATG | HpyPIP |
| 1176 | serine acetyltransferase | |||
| 1313 | carboxyl-terminal protease | |||
| ??? | R | HpyP006ORF6285P (80% identity) | GANTC | HpyPORF1318P |
| 1316 | 42 aa hypothetical protein | |||
| 1317 | 57 aa hypothetical protein | |||
| 1318 | M | M.HpyNCI57ORFXP (100% identity) | GANTC | M.HpyPORF1318P |
| 1319 | DNA methyltransferase | |||
| 1318 | 159 aa hypothetical protein | |||
| 1319 | RM | HpyMA22ORF280P (72% identity) | HpyPORF1319P | |
| 1320 | 262 aa hypothetical protein | |||
| 1353 | relaxase | |||
| ??? | RM | 214 aa hypothetical protein | HpyPORF1P | |
| 1354 | nicotinate-nucleotide pyrophosphorylase | |||
| 1388 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 1389 | M | M.HpyP12VI (100% identity) | GAATTC | M.HpyPII |
| 1390 | R | HpyP12VIP (90% identity) | GAATTC | HpyPIIP |
| 1391 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1448 | DNA polymerase I | |||
| 1449 | S | S.HpyP12ORF7380P (100% identity) | S.HpyPORF1449P | |
| 1450 | type IIS R-M system methyltransferase | |||
| 1449 | type IIS R-M system restriction enzyme | |||
| 1450 | RM | HpyP12ORF7380P (100% identity) | HpyPORF1450P | |
| 1451 | amidophosphoribosyltransferase | |||
| 1477 | 306 aa hypothetical protein | |||
| 1478 | R | HpyP12ORF7520P (89% identity) | CCATC | HpyPORF1478P |
| 1479 | outer membrane protein HorK | |||
| 1493 | 164 aa hypothetical protein | |||
| 1494 | RM | HpyP12ORF7600P (100% identity) | HpyPORF1494P | |
| 1495 | 667 aa hypothetical protein | |||
| 1522 | 98 aa hypothetical protein | |||
| 1523 | M | M.HpyP12ORF7740P (100% identity) | TGCA | M.HpyPORF1523P |
| 1524 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 598 | 2-oxoglutarate oxidoreductase OorC subunit | |||
| 599 | R | HpyP12ORF3070P (100% identity) | CTGCAG | HpyPORF600P |
| 600 | M | M.HpyP12ORF3070P (100% identity) | M.HpyPORF600P | |
| 601 | 54 aa hypothetical protein | |||
| 1364 | response regulator | |||
| 1365 | M | M.HpyL026ORF6735P (92% identity) | M.HpyPORF1365P | |
| 1366 | R | HpyP12ORF6955P (93% identity) | HpyPORF1365P | |
| 1367 | rod shape-determining protein MreC | |||
| 1376 | endonuclease G | |||
| 1377 | M | M.HpyP12ORF7020P (100% identity) | M.HpyPORF1377P | |
| 1378 | R | HpyP12ORF7020P (100% identity) | HpyPORF1377P | |
| 1379 | biotin synthetase | |||
| 1495 | 667 aa hypothetical protein | |||
| 1496 | R | HpyP12XIIP (100% identity) | GACC | HpyPIXP |
| 1497 | M | M.HpyP12XII (100% identity) | GACC | M.HpyPIX |
| 1498 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 518 | glutamine synthetase | |||
| 519 | R | HpyP12GmrSDP (100% identity) | HpyPGmrSDP | |
| 520 | 50S ribosomal protein L9 | |||