Helicobacter pylori G27 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori G27 RM systems
Ref: Baltrus,D.A. et al. unpublished
REBASE ref # 14042
Complete sequence: 1,652,982 bp
GenBank #: CP001173 (NC_011333)
REBASE acronym: HpyG
Org_num: 5168
All begin HPG27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 418 | polyphosphate kinase | |||
| 419 | S | S.Hpy1563ORF5095P (86% identity) | S.HpyGORF420P | |
| 420 | M | M.Hpy1563ORF5095P (98% identity) | M.HpyGORF420P | |
| ??? | R | HpySW03ORF2185P (91% identity) | HpyGORF420P | |
| 423 | 631 aa hypothetical protein | |||
| 745 | 49 aa hypothetical protein | |||
| 746 | S | S.Hpy1563ORF6745P (100% identity) | S.HpyGORF746P | |
| 747 | cadmium-transporting ATPase | |||
| 803 | thiamine phosphate pyrophosphorylase | |||
| 804 | R | Hpy1563ORF7055P (100% identity) | HpyGORF806P | |
| 805 | S | S.Hpy1563ORF7055P (100% identity) | S.HpyGORF806P | |
| 806 | M | M.Hpy1563ORF7055P (100% identity) | M.HpyGORF806P | |
| 807 | 227 aa hypothetical protein | |||
| 1454 | thymidylate synthase | |||
| 1455 | S | S.Hpy1563ORF2570P (100% identity) | S.HpyGORF1456P | |
| 1456 | M | M.Hpy1563ORF2570P (100% identity) | M.HpyGORF1456P | |
| 1457 | R | Hpy1563ORF2570P (100% identity) | HpyGORF1456P | |
| 1458 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 43 | 330 aa hypothetical protein | |||
| 44 | M | M1.Hpy1563ORF3180P (100% identity) | CCTC | M1.HpyGORF44P |
| 45 | M | M2.Hpy1563ORF3180P (79% identity) | CCTC | M2.HpyGORF44P |
| 46 | R | Hpy1563ORF3180P (81% identity) | CCTC | HpyGORF44P |
| ??? | 419 aa Hypothetical protein HP17_00571 | |||
| 46 | 348 aa hypothetical protein | |||
| ??? | R | Hpy1563ORF3200P (100% identity) | CCTTC | HpyGORF49P |
| 49 | M | M.Hpy1563ORF3200P (100% identity) | CCTTC | M.HpyGORF49P |
| 50 | sodium/proline symporter | |||
| 83 | malonylcoenzymeA-acyl carrier protein | |||
| 84 | R | type II restriction enzyme protein | GATC | HpyGORF85P |
| 85 | M | M.Hpy1563ORF3395P (100% identity) | GATC | M.HpyGORF85P |
| 86 | pseudogene | |||
| 238 | exonuclease VII, large subunit | |||
| 239 | M | M.Hpy1563ORF4190P (100% identity) | TCGA | M.HpyGORF239P |
| 240 | 204 aa hypothetical protein | |||
| 240 | 204 aa hypothetical protein | |||
| 241 | R | HpyG004IIP (90% identity) | CCGG | HpyGORF242P |
| 242 | M | M.Hpy1563ORF4205P (96% identity) | CCGG | M.HpyGORF242P |
| 243 | ATP-dependent protease binding subunit / | |||
| 289 | 293 aa hypothetical protein | |||
| 290 | R | Hpy1563ORF4455P (100% identity) | CTNAG | HpyGORF291P |
| 291 | M | M.Hpy1563ORF4455P (100% identity) | CTNAG | M.HpyGORF291P |
| 292 | 122 aa hypothetical protein | |||
| 435 | outer membrane protein | |||
| 436 | M | M.Hpy1563ORF5180P (100% identity) | ATTAAT | M.HpyGORF436P |
| 437 | DD-heptosyl transferase | |||
| 438 | GTP-binding protein | |||
| 439 | M | M.Hpy1563ORF5195P (100% identity) | ACNGT | M.HpyGORF439P |
| 440 | R | type II restriction endonuclease | ACNGT | HpyGORF439P |
| 441 | type II DNA modification enzyme | |||
| 440 | type II restriction endonuclease | |||
| 441 | M | M.Hpy1563ORF5205P (100% identity) | ACGT | M.HpyGORF441P |
| ??? | R | Hpy1563ORF5205P (92% identity) | ACGT | HpyGORF441P |
| 444 | catalase-like protein | |||
| 461 | DNA gyrase subunit B | |||
| 462 | M | M.Hpy1563ORF5310P (100% identity) | GTAC | M.HpyGORF462P |
| 463 | R | HpyNSH57I (87% identity) | GTAC | HpyGORF462P |
| 464 | outer membrane protein | |||
| 628 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | Hpy1563ORF6150P (100% identity) | HpyGORF629P | |
| 631 | outer membrane protein | |||
| 774 | osmoprotection protein | |||
| 775 | R | HpySP507IVP (88% identity) | CGWCG | HpyGORF776P |
| 776 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.HpyGORF776P |
| 777 | osmo protection protein | |||
| 859 | flagellar hook protein | |||
| 860 | R | Hpy1563ORF7345P (94% identity) | GTNNAC | HpyGORF861P |
| 861 | M | M.Hpy1563ORF7345P (100% identity) | GTNNAC | M.HpyGORF861P |
| 862 | rephelicase, single-stranded DNA-dependent | |||
| 1027 | biotin carboxylase | |||
| 1028 | M | M.Hpy1563ORF360P (100% identity) | TCNNGA | M.HpyGI |
| 1029 | R | HpyU409XIVP (100% identity) | TCNNGA | HpyGI |
| 1030 | 217 aa hypothetical protein | |||
| 1065 | 144 aa hypothetical protein | |||
| 1066 | M | M.Hpy1563ORF550P (100% identity) | GCGC | M.HpyGIII |
| 1067 | flgM protein | |||
| 1154 | 222 aa hypothetical protein | |||
| 1155 | M | M.Hpy1563ORF1025P (100% identity) | CATG | M.HpyGORF1155P |
| 1156 | 94 aa hypothetical protein | |||
| 1230 | 420 aa hypothetical protein | |||
| 1231 | M | M.Hpy1563ORF1410P (100% identity) | GATATC | M.HpyGORF1231P |
| ??? | R | Hpy030XIIIP (80% identity) | GATATC | HpyGORF1231P |
| ??? | adenine-specific DNA methylase | |||
| 1298 | carboxyl-terminal protease | |||
| 1299 | R | HpyPR10ORF6690P (82% identity) | GANTC | HpyGORF1301P |
| 1300 | 50 aa hypothetical protein | |||
| 1301 | M | M.Hpy1563ORF1770P (100% identity) | GANTC | M.HpyGORF1301P |
| 1302 | adenine specific DNA methyltransferase | |||
| 1301 | adenine specific DNA methyltransferase | |||
| 1302 | RM | Hpy1563ORF1775P (100% identity) | HpyGORF1302P | |
| 1303 | nicotinate-nucleotide pyrophosphorylase | |||
| 1393 | DNA polymerase I | |||
| 1394 | S | S.Hpy1563ORF2260P (100% identity) | S.HpyGORF1395P | |
| 1395 | RM | Hpy1563ORF2260P (100% identity) | HpyGORF1395P | |
| 1396 | 185 aa hypothetical protein | |||
| 1421 | 355 aa hypothetical protein | |||
| 1422 | M | M1.Hpy1563ORF2395P (100% identity) | GATGG | M1.HpyGORF1422P |
| 1423 | M | M2.Hpy1563ORF2395P (100% identity) | CCATC | M2.HpyGORF1422P |
| 1424 | R | Hpy1563ORF2395P (100% identity) | CCATC | HpyGORF1422P |
| 1425 | outer membrane protein | |||
| 1440 | 145 aa hypothetical protein | |||
| 1441 | RM | Hpy1563ORF2490P (100% identity) | HpyGORF1441P | |
| 1442 | DEAD/DEAH box helicase family protein | |||
| 1473 | 67 aa hypothetical protein | |||
| 1474 | M | M.Hpy1563ORF2655P (100% identity) | TGCA | M.HpyGII |
| 1475 | R | Hpy1563ORF2655P (97% identity) | TGCA | HpyGII |
| 1476 | ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 551 | 2-oxoglutarate oxidoreductase OorC subunit | |||
| 552 | R | Hpy1563ORF5780P (100% identity) | GCAG | HpyGORF553P |
| 553 | M | M.Hpy1563ORF5780P (100% identity) | GCAG | M.HpyGORF553P |
| 554 | 54 aa hypothetical protein | |||
| ??? | restriction endonuclease EcoRV family protein | |||
| ??? | M | adenine-specific DNA methylase | M.HpyGORF1233P | |
| 1235 | 485 aa hypothetical protein | |||
| 1313 | response regulator | |||
| ??? | M | M.Hpy1563ORF1835P (100% identity) | M.HpyGORF1314P | |
| 1316 | R | Hpy1563ORF1835P (100% identity) | HpyGORF1314P | |
| 1317 | rod shape-determining protein | |||
| 1326 | endonuclease G | |||
| 1327 | M | M.Hpy1563ORF1895P (93% identity) | M.HpyGORF1327P | |
| 1328 | R | Hpy1563ORF1895P (95% identity) | HpyGORF1327P | |
| 1329 | biotin synthetase | |||
| 1441 | type II S restriction-modification protein | |||
| 1442 | R | Hpy1563ORF2500P (100% identity) | HpyGORF1443P | |
| ??? | M | M.Hpy1563ORF2500P (100% identity) | M.HpyGORF1443P | |
| 1445 | DNA recombinase | |||