Putative Ralstonia solanacearum Phyl III-seqv23-5 RM systems
Ref: WICKER,Emmanuel unpublished
REBASE ref # 21454
Sequence length: | GenBank #: | |
chromosome I: | 5,416,545 bp | LN899819 |
chromosome II: | 5,839,544 bp | LN899820 |
chromosome III: | 5,680,609 bp | LN899821 |
chromosome IV: | 5,781,097 bp | LN899822 |
chromosome IX: | 5,566,589 bp | LN899827 |
chromosome V: | 5,684,645 bp | LN899823 |
chromosome VI: | 5,788,639 bp | LN899824 |
chromosome VII: | 5,711,184 bp | LN899825 |
chromosome VIII: | 5,687,005 bp | LN899826 |
REBASE acronym: Rso23
Org_num: 17674
All begin PSS4_v1_, RD1301_v1_, RUN1744_v1_, RUN1985_v1_, RUN215_v1_, RUN39_v1_, TD1301_v1_, TF3108_v1_, TO10_v1_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
430024 | HTH-type transcriptional regulator NsrR | |||
430025 | M | M.Rso386ORF14325P (99% identity) | M.Rso231ORF430025P | |
430026 | conserved protein of unknown function | |||
430027 | R | Rso386ORF14325P (99% identity) | Rso231ORF430025P | |
430028 | sensor histidine kinase | |||
chromosome II | ||||
1110015 | sensor histidine kinase | |||
1110016 | R | Rso638ORF225P (88% identity) | Rso232ORF1110018P | |
1110017 | conserved protein of unknown function | |||
1110018 | M | M.Rsp650ORF235P (100% identity) | M.Rso232ORF1110018P | |
1110019 | HTH-type transcriptional regulator NsrR | |||
chromosome III | ||||
930020 | HTH-type transcriptional regulator NsrR | |||
930021 | M | M.RsoX05ORF971P (100% identity) | M.Rso233ORF930021P | |
930022 | conserved protein of unknown function | |||
930023 | R | RsoWR1ORFKP (88% identity) | Rso233ORF930021P | |
930024 | sensor histidine kinase | |||
chromosome IV | ||||
1130005 | sensor histidine kinase | |||
1130006 | R | Rso238ORF820018P (100% identity) | Rso234ORF1130008P | |
1130007 | conserved protein of unknown function | |||
1130008 | M | M.Rso238ORF820018P (100% identity) | M.Rso234ORF1130008P | |
1130009 | Nitrite-sensitive transcriptional repressor NsrR | |||
chromosome IX | ||||
1150026 | HTH-type transcriptional regulator NsrR | |||
1150027 | M | M.Rso244ORFHP (99% identity) | M.Rso239ORF1150027P | |
1150028 | conserved protein of unknown function | |||
1150029 | R | RsoUW763ORF245P (99% identity) | Rso239ORF1150027P | |
1150030 | sensor histidine kinase | |||
chromosome V | ||||
320034 | HTH-type transcriptional regulator NsrR | |||
320035 | M | M.Rso238ORF820018P (100% identity) | M.Rso235ORF320035P | |
320036 | conserved protein of unknown function | |||
320037 | R | Rso238ORF820018P (100% identity) | Rso235ORF320035P | |
320038 | sensor histidine kinase | |||
chromosome VI | ||||
30009 | sensor histidine kinase | |||
30010 | R | RsoWR1ORFKP (88% identity) | Rso236ORF30012P | |
30011 | conserved protein of unknown function | |||
30012 | M | M.RsoX05ORF971P (100% identity) | M.Rso236ORF30012P | |
30013 | HTH-type transcriptional regulator NsrR | |||
30057 | conserved protein of unknown function | |||
30059 | M | M.Bps15486ORF32005P (94% identity) | M.Rso236ORF30059P | |
30060 | S | S.Rso211479ORF3130P (99% identity) | S.Rso236ORF30059P | |
30061 | R | Bps15486ORF32005P (93% identity) | Rso236ORF30059P | |
30062 | conserved protein of unknown function | |||
chromosome VII | ||||
590015 | sensor histidine kinase | |||
590016 | R | Rso238ORF820018P (100% identity) | Rso237ORF590018P | |
590017 | conserved protein of unknown function | |||
590018 | M | M.Rso238ORF820018P (100% identity) | M.Rso237ORF590018P | |
590019 | HTH-type transcriptional regulator NsrR | |||
chromosome VIII | ||||
820015 | sensor histidine kinase | |||
820016 | R | Rso237ORF590018P (100% identity) | Rso238ORF820018P | |
820017 | conserved protein of unknown function | |||
820018 | M | M.Rso237ORF590018P (100% identity) | M.Rso238ORF820018P | |
820019 | HTH-type transcriptional regulator NsrR | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
680085 | conserved protein of unknown function | |||
680086 | M | M.Rsp24678ORF3635P (85% identity) | ACCGGT | M.Rso231ORF680086P |
680088 | conserved protein of unknown function | |||
870002 | conserved protein of unknown function | |||
870003 | M | M1.Rso386ORF13485P (97% identity) | M1.Rso231ORF870003P | |
870004 | M | Site-specific DNA-methyltransferase | M2.Rso231ORF870003P | |
880001 | protein of unknown function | |||
880003 | conserved protein of unknown function | |||
880004 | M | M1.Rso231ORF870003P (96% identity) | M.Rso231ORF880004P | |
880005 | protein of unknown function | |||
1010017 | conserved protein of unknown function | |||
1010018 | M | conserved protein of unknown function | M.Rso231ORF1010018P | |
1020001 | Bacteriophage-related protein (fragment) | |||
1310004 | tryptophan synthase beta chain | |||
1310005 | M | M.RsoCMR15ORF11393P (100% identity) | M.Rso231ORF1310005P | |
1310006 | Tryptophan synthase alpha chain | |||
1650001 | protein of unknown function | |||
1650002 | M | M.Rso231ORF880004P (95% identity) | M.Rso231ORF1650002P | |
1650003 | conserved protein of unknown function | |||
1750006 | conserved protein of unknown function | |||
1750007 | M | M.Rps2340ORFDP (74% identity) | M.Rso231ORF1750007P | |
1750009 | conserved protein of unknown function | |||
3470001 | protein of unknown function | |||
3480001 | M | Site-specific DNA-methyltransferase | M.Rso231ORF3480001P | |
3490001 | protein of unknown function | |||
chromosome II | ||||
200015 | conserved protein of unknown function | |||
200016 | M | M.BglHN1ORF1325P (93% identity) | M.Rso232ORF200016P | |
200017 | protein of unknown function | |||
240010 | type III effector protein | |||
??? | M | M.RsoRS10ORF23440P (100% identity) | M.Rso232ORF240011P | |
240013 | conserved protein of unknown function | |||
690031 | Tryptophan synthase alpha chain | |||
690032 | M | M.Rsp650ORF7450P (100% identity) | M.Rso232ORF690032P | |
690033 | tryptophan synthase beta chain | |||
1490010 | conserved protein of unknown function | |||
1490011 | M | M.Rsp650ORF7785P (100% identity) | M.Rso232ORF1490011P | |
1490013 | conserved protein of unknown function | |||
1530003 | conserved protein of unknown function | |||
1530004 | M | M2.Rsp650ORF1115P (100% identity) | M1.Rso232ORF1530004P | |
1530005 | M | M1.Rsp650ORF1115P (100% identity) | M2.Rso232ORF1530004P | |
1530006 | conserved protein of unknown function | |||
1560012 | protein of unknown function | |||
1560013 | R | Rsp650ORF1405P (100% identity) | AGGCCT | Rso232ORF1560014P |
1560014 | M | M.Rsp650ORF1405P (100% identity) | AGGCCT | M.Rso232ORF1560014P |
1560015 | DNA damage-inducible protein | |||
1890004 | protein of unknown function | |||
1890005 | M | M.Rso204ORF16880P (99% identity) | CTCGAG | M.Rso232ORF1890005P |
1890006 | R | RsoCQPS1ORF7900P (100% identity) | CTCGAG | Rso232ORF1890005P |
1890007 | bacteriophage-related protein | |||
2090025 | protein of unknown function | |||
2100001 | M | M2.Rsp650ORF13700P (100% identity) | M1.Rso232ORF2100001P | |
2100002 | M | M1.Rsp650ORF13700P (100% identity) | M2.Rso232ORF2100001P | |
2100003 | conserved protein of unknown function | |||
2100011 | bacteriophage-related protein | |||
2110001 | M | M1.Rso1458ORF1025P (100% identity) | M1.Rso232ORF2110001P | |
2110002 | M | M1.Rsp650ORF25990P (100% identity) | M2.Rso232ORF2110001P | |
2110003 | conserved protein of unknown function | |||
2110004 | conserved protein of unknown function | |||
2120001 | M | M1.RsoT02ORFKP (76% identity) | M1.Rso232ORF2120001P | |
2120002 | M | M2.Rso236ORF1170014P (98% identity) | M2.Rso232ORF2120001P | |
2120003 | conserved protein of unknown function | |||
chromosome III | ||||
190020 | Tryptophan synthase alpha chain | |||
190021 | M | M.Rsp647ORF10140P (100% identity) | M.Rso233ORF190021P | |
190022 | tryptophan synthase beta chain | |||
400049 | AAA ATPase | |||
400050 | M | M.RsoWR1ORFIP (100% identity) | M.Rso233ORF400050P | |
400051 | protein of unknown function | |||
400051 | protein of unknown function | |||
400052 | M | M.RsoWR1ORFDP (100% identity) | AGGCCT | M.Rso233ORF400052P |
400053 | conserved protein of unknown function | |||
890010 | Signal peptide protein | |||
900001 | M | M2.Rsp650ORF13700P (100% identity) | M.Rso233ORF2100001P | |
900002 | dna modification methylase protein | |||
900001 | Site-specific DNA-methyltransferase | |||
900002 | M | M.RsoWR1ORFLP (89% identity) | M.Rso233ORF900002P | |
900003 | conserved protein of unknown function | |||
900026 | conserved protein of unknown function | |||
900027 | M | M.RsyLLRS1ORF12355P (97% identity) | M.Rso233ORF900027P | |
900028 | protein of unknown function | |||
chromosome IV | ||||
1280036 | type III effector | |||
1280037 | M | M1.RsoB2ORF12695P (100% identity) | M1.Rso234ORF1280037P | |
1280038 | M | M2.Rso238ORF700036P (100% identity) | M2.Rso234ORF1280037P | |
1280039 | conserved protein of unknown function | |||
1940015 | conserved protein of unknown function | |||
1940017 | M | M1.RsoMepORFIP (100% identity) | M1.Rso234ORF1940017P | |
1940018 | M | M1.Rso238ORF100005P (100% identity) | M2.Rso234ORF1940017P | |
1940019 | conserved protein of unknown function | |||
2200026 | conserved protein of unknown function | |||
2200027 | M | M.Rso238ORF780034P (100% identity) | M.Rso234ORF2200027P | |
2200028 | conserved exported protein of unknown function | |||
2900004 | phage integrase | |||
2900006 | M | M.RsoMepORFCP (100% identity) | M.Rso234ORF2900006P | |
2900007 | protein of unknown function | |||
3770023 | tryptophan synthase beta chain | |||
3770024 | M | M.Rsp650ORF7450P (100% identity) | M.Rso234ORF3770024P | |
3770025 | Tryptophan synthase alpha chain | |||
chromosome IX | ||||
70001 | conserved protein of unknown function | |||
70002 | RM | Pae6077ORF4087P (95% identity) | GAGGAC | Rso239ORF70002P |
70003 | site-specific DNA recombinase; e14 prophage | |||
150114 | Tryptophan synthase alpha chain | |||
150115 | M | M.Rsp650ORF7450P (100% identity) | M.Rso239ORF150115P | |
150116 | tryptophan synthase beta chain | |||
330002 | protein of unknown function | |||
330003 | M | M.Ade3ORF15395P (69% identity) | M.Rso239ORF330003P | |
330004 | ATPase domain-containing protein | |||
700021 | type III effector | |||
700022 | M | M2.Rso244ORFCP (88% identity) | M1.Rso239ORF700022P | |
700023 | M | M2.Rso311693ORF2130P (79% identity) | M2.Rso239ORF700022P | |
700024 | conserved protein of unknown function | |||
800010 | conserved protein of unknown function | |||
800011 | V | V.RsoFJ1003ORFBP (93% identity) | V.Rso239ORF800012P | |
800012 | M | M.RsoFJ1003ORFBP (99% identity) | CCGCGG | M.Rso239ORF800012P |
800013 | conserved protein of unknown function | |||
1610001 | conserved protein of unknown function | |||
??? | M | M.Rsp647ORF23515P (46% identity) | M.Rso239ORF1610002P | |
1610004 | dna modification methylase protein | |||
??? | hypothetical protein | |||
1610004 | M | M1.RsoMepORFIP (99% identity) | M.Rso239ORF1610004P | |
1610006 | conserved protein of unknown function | |||
chromosome V | ||||
620025 | tryptophan synthase beta chain | |||
620026 | M | M.Rsp650ORF7450P (100% identity) | M.Rso235ORF620026P | |
620027 | Tryptophan synthase alpha chain | |||
990033 | phage excisionase | |||
990034 | M | M.RsoMepORFCP (100% identity) | M.Rso235ORF990034P | |
990035 | protein of unknown function | |||
1270034 | type III effector | |||
1270035 | M | M1.RsoB2ORF12695P (100% identity) | M1.Rso235ORF1270035P | |
1270036 | M | M2.Rso238ORF700036P (100% identity) | M2.Rso235ORF1270035P | |
1270037 | conserved protein of unknown function | |||
1400010 | protein of unknown function | |||
1410001 | M | M1.Rso238ORF100005P (100% identity) | M1.Rso235ORF1410001P | |
1410002 | M | M1.RsoMepORFIP (100% identity) | M2.Rso235ORF1410001P | |
1420001 | Serine protease | |||
chromosome VI | ||||
290065 | conserved protein of unknown function | |||
290066 | M | M.RsoM7ORF1765P (100% identity) | M.Rso236ORF290066P | |
290068 | conserved protein of unknown function | |||
290129 | Tryptophan synthase alpha chain | |||
290130 | M | M.Rsp647ORF10140P (100% identity) | M.Rso236ORF290130P | |
290131 | tryptophan synthase beta chain | |||
770001 | protein of unknown function | |||
770002 | M | M.RsoWR1ORFAP (100% identity) | M.Rso236ORF770002P | |
770003 | conserved protein of unknown function | |||
1160015 | conserved protein of unknown function | |||
1160016 | M | M2.Rsp650ORF25990P (96% identity) | M1.Rso236ORF1160016P | |
1160017 | M | M2.Rso244ORFCP (87% identity) | M2.Rso236ORF1160016P | |
1160018 | type III effector | |||
1170013 | conserved protein of unknown function | |||
1170014 | M | M2.RsoB2ORF22870P (98% identity) | M1.Rso236ORF1170014P | |
1170015 | M | M2.Rso232ORF2120001P (98% identity) | M2.Rso236ORF1170014P | |
1170016 | conserved protein of unknown function | |||
chromosome VII | ||||
270029 | protein of unknown function | |||
270030 | M | M.RsoMepORFCP (100% identity) | M.Rso237ORF270030P | |
270032 | phage excisionase | |||
850004 | conserved protein of unknown function | |||
850005 | M | M1.Rso238ORF100005P (100% identity) | M1.Rso237ORF850005P | |
850006 | M | M1.RsoMepORFIP (100% identity) | M2.Rso237ORF850005P | |
850008 | conserved protein of unknown function | |||
1690002 | Tryptophan synthase alpha chain | |||
1690003 | M | M.Rsp650ORF7450P (100% identity) | M.Rso237ORF1690003P | |
1690004 | tryptophan synthase beta chain | |||
2090003 | type III effector | |||
2090004 | M | M1.RsoB2ORF12695P (100% identity) | M1.Rso237ORF2090004P | |
2090005 | M | M2.Rso238ORF700036P (100% identity) | M2.Rso237ORF2090004P | |
2090006 | conserved protein of unknown function | |||
chromosome VIII | ||||
100004 | conserved protein of unknown function | |||
100005 | M | M1.Rso237ORF850005P (100% identity) | M1.Rso238ORF100005P | |
100006 | M | M1.RsoMepORFIP (100% identity) | M2.Rso238ORF100005P | |
100008 | conserved protein of unknown function | |||
150033 | Tryptophan synthase alpha chain | |||
150034 | M | M.Rsp650ORF7450P (100% identity) | M.Rso238ORF150034P | |
150035 | tryptophan synthase beta chain | |||
700035 | type III effector | |||
700036 | M | M1.RsoB2ORF12695P (100% identity) | M1.Rso238ORF700036P | |
700037 | M | M2.Rso237ORF2090004P (100% identity) | M2.Rso238ORF700036P | |
700038 | conserved protein of unknown function | |||
780033 | conserved protein of unknown function | |||
780034 | M | M.Rso234ORF2200027P (100% identity) | M.Rso238ORF780034P | |
780035 | conserved exported protein of unknown function | |||
850071 | protein of unknown function | |||
850072 | M | M.RsoMepORFCP (100% identity) | M.Rso238ORF850072P | |
850075 | phage integrase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome IX | ||||
1150007 | conserved protein of unknown function | |||
1150008 | R | RpsRSMrrP (100% identity) | Rso239MrrP | |
1150009 | Diguanylate cyclase/phosphodiesterase (GGDEF EAL |