Ref: WICKER,Emmanuel unpublished

REBASE ref # 21454

Sequence length:GenBank #:
chromosome I: 5,416,545 bp LN899819
chromosome II: 5,839,544 bp LN899820
chromosome III: 5,680,609 bp LN899821
chromosome IV: 5,781,097 bp LN899822
chromosome IX: 5,566,589 bp LN899827
chromosome V: 5,684,645 bp LN899823
chromosome VI: 5,788,639 bp LN899824
chromosome VII: 5,711,184 bp LN899825
chromosome VIII: 5,687,005 bp LN899826

REBASE acronym: Rso23

Org_num: 17674

 

All begin PSS4_v1_, RD1301_v1_, RUN1744_v1_, RUN1985_v1_, RUN215_v1_, RUN39_v1_, TD1301_v1_, TF3108_v1_, TO10_v1_

Type I
ORF Gene Most similar Specificity Name
 
chromosome I
 
430024 HTH-type transcriptional regulator NsrR
430025 M M.Rso239ORF1150027P (0% identity) M.Rso231ORF430025P
430026 conserved protein of unknown function
430027 R RsoRSCMORF165P (0% identity) Rso231ORF430025P
430028 sensor histidine kinase
 
chromosome II
 
1110015 sensor histidine kinase
1110016 R RsoRSCMORF165P (0% identity) Rso232ORF1110018P
1110017 conserved protein of unknown function
1110018 M M.RsoY45ORFAP (1% identity) M.Rso232ORF1110018P
1110019 HTH-type transcriptional regulator NsrR
 
chromosome III
 
930020 HTH-type transcriptional regulator NsrR
930021 M M.RsoX05ORF971P (1% identity) M.Rso233ORF930021P
930022 conserved protein of unknown function
930023 R RsoRSCMORF165P (0% identity) Rso233ORF930021P
930024 sensor histidine kinase
 
chromosome IV
 
1130005 sensor histidine kinase
1130006 R Rso238ORF820018P (1% identity) Rso234ORF1130008P
1130007 conserved protein of unknown function
1130008 M M.Rso238ORF820018P (1% identity) M.Rso234ORF1130008P
1130009 Nitrite-sensitive transcriptional repressor NsrR
 
chromosome IX
 
1150026 HTH-type transcriptional regulator NsrR
1150027 M M.Rso244ORFHP (0% identity) M.Rso239ORF1150027P
1150028 conserved protein of unknown function
1150029 R RsoM7ORF12260P (0% identity) Rso239ORF1150027P
1150030 sensor histidine kinase
 
chromosome V
 
320034 HTH-type transcriptional regulator NsrR
320035 M M.Rso238ORF820018P (1% identity) M.Rso235ORF320035P
320036 conserved protein of unknown function
320037 R Rso238ORF820018P (1% identity) Rso235ORF320035P
320038 sensor histidine kinase
 
chromosome VI
 
30009 sensor histidine kinase
30010 R RsoRSCMORF165P (0% identity) Rso236ORF30012P
30011 conserved protein of unknown function
30012 M M.RsoX05ORF971P (1% identity) M.Rso236ORF30012P
30013 HTH-type transcriptional regulator NsrR
 
30057 conserved protein of unknown function
30059 M M.Bps15486ORF32005P (0% identity) M.Rso236ORF30059P
30060 S S.Vta4600ORF3177P (0% identity) S.Rso236ORF30059P
30061 R Bps15486ORF32005P (0% identity) Rso236ORF30059P
30062 conserved protein of unknown function
 
chromosome VII
 
590015 sensor histidine kinase
590016 R Rso238ORF820018P (1% identity) Rso237ORF590018P
590017 conserved protein of unknown function
590018 M M.Rso238ORF820018P (1% identity) M.Rso237ORF590018P
590019 HTH-type transcriptional regulator NsrR
 
chromosome VIII
 
820015 sensor histidine kinase
820016 R Rso237ORF590018P (1% identity) Rso238ORF820018P
820017 conserved protein of unknown function
820018 M M.Rso237ORF590018P (1% identity) M.Rso238ORF820018P
820019 HTH-type transcriptional regulator NsrR
Type II
ORF Gene Most similar Specificity Name
 
chromosome I
 
680085 conserved protein of unknown function
680086 M M.Rsp24678ORF3635P (0% identity) ACCGGT M.Rso231ORF680086P
680088 conserved protein of unknown function
 
870002 conserved protein of unknown function
870003 M M.Rso231ORF880004P (0% identity) M1.Rso231ORF870003P
870004 M M2.RsoCMR15ORF30043P (0% identity) M2.Rso231ORF870003P
880001 protein of unknown function
 
880003 conserved protein of unknown function
880004 M M1.Rso231ORF870003P (0% identity) M.Rso231ORF880004P
880005 protein of unknown function
 
1010017 conserved protein of unknown function
1010018 M M1.Rso244ORFCP (0% identity) M.Rso231ORF1010018P
1020001 Bacteriophage-related protein (fragment)
 
1310004 tryptophan synthase beta chain
1310005 M M.RsoCMR15ORF11393P (1% identity) M.Rso231ORF1310005P
1310006 Tryptophan synthase alpha chain
 
1650001 protein of unknown function
1650002 M M.Rso231ORF880004P (0% identity) M.Rso231ORF1650002P
1650003 conserved protein of unknown function
 
1750006 conserved protein of unknown function
1750007 M M.RsoP673ORFAP (0% identity) M.Rso231ORF1750007P
1750009 conserved protein of unknown function
 
3470001 protein of unknown function
3480001 M M2.Rso231ORF870003P (0% identity) M.Rso231ORF3480001P
3490001 protein of unknown function
 
chromosome II
 
200015 conserved protein of unknown function
200016 M M.Rso161ORFFP (0% identity) M.Rso232ORF200016P
200017 protein of unknown function
 
240010 type III effector protein
??? M M.RsoM7ORF22495P (0% identity) M.Rso232ORF240011P
240013 conserved protein of unknown function
 
690031 Tryptophan synthase alpha chain
690032 M M.RsoY45ORFDP (0% identity) M.Rso232ORF690032P
690033 tryptophan synthase beta chain
 
1490010 conserved protein of unknown function
1490011 M M.RsoT02ORFAP (0% identity) M.Rso232ORF1490011P
1490013 conserved protein of unknown function
 
1530003 conserved protein of unknown function
1530004 M M2.RsoYC40ORF234P (0% identity) M1.Rso232ORF1530004P
1530005 M M2.Rso10709ORF2867P (0% identity) M2.Rso232ORF1530004P
1530006 conserved protein of unknown function
 
1560012 protein of unknown function
1560013 R Rso10709ORF2793P (1% identity) AGGCCT Rso232ORF1560014P
1560014 M M.Rso10709ORF2793P (1% identity) AGGCCT M.Rso232ORF1560014P
1560015 DNA damage-inducible protein
 
1890004 protein of unknown function
1890005 M M.RsoCQPS1ORF7900P (0% identity) CTCGAG M.Rso232ORF1890005P
1890006 R RsoCQPS1ORF7900P (1% identity) CTCGAG Rso232ORF1890005P
1890007 bacteriophage-related protein
 
2090025 protein of unknown function
2100001 M M1.RsoOE11ORF12360P (1% identity) M1.Rso232ORF2100001P
2100002 M M2.RsoOE11ORF12360P (0% identity) M2.Rso232ORF2100001P
2100003 conserved protein of unknown function
 
2100011 bacteriophage-related protein
2110001 M M1.Rso1458ORF1025P (1% identity) M1.Rso232ORF2110001P
2110002 M M1.RsoCQPS1ORF17745P (1% identity) M2.Rso232ORF2110001P
2110003 conserved protein of unknown function
 
2110004 conserved protein of unknown function
2120001 M M1.RsoT02ORFKP (0% identity) M1.Rso232ORF2120001P
2120002 M M2.Rso236ORF1170014P (0% identity) M2.Rso232ORF2120001P
2120003 conserved protein of unknown function
 
chromosome III
 
190020 Tryptophan synthase alpha chain
190021 M M.RsoYC40ORF1590P (1% identity) M.Rso233ORF190021P
190022 tryptophan synthase beta chain
 
400049 AAA ATPase
400050 M M.Rso10319ORF14640P (1% identity) M.Rso233ORF400050P
400051 protein of unknown function
 
400051 protein of unknown function
400052 M M.Rso10319ORF14635P (1% identity) AGGCCT M.Rso233ORF400052P
400053 conserved protein of unknown function
 
890010 Signal peptide protein
900001 M M1.RsoOE11ORF12360P (1% identity) M.Rso233ORF2100001P
900002 dna modification methylase protein
 
900001 Site-specific DNA-methyltransferase
900002 M M2.RsoOE11ORF12360P (0% identity) M.Rso233ORF900002P
900003 conserved protein of unknown function
 
900026 conserved protein of unknown function
900027 M M.RsoHA41ORFGP (0% identity) M.Rso233ORF900027P
900028 protein of unknown function
 
chromosome IV
 
1280036 type III effector
1280037 M M1.Rso238ORF700036P (1% identity) M1.Rso234ORF1280037P
1280038 M M2.Rso238ORF700036P (1% identity) M2.Rso234ORF1280037P
1280039 conserved protein of unknown function
 
1940015 conserved protein of unknown function
1940017 M M1.RsoMepORFIP (1% identity) M1.Rso234ORF1940017P
1940018 M M1.Rso238ORF100005P (1% identity) M2.Rso234ORF1940017P
1940019 conserved protein of unknown function
 
2200026 conserved protein of unknown function
2200027 M M.Rso238ORF780034P (1% identity) M.Rso234ORF2200027P
2200028 conserved exported protein of unknown function
 
2900004 phage integrase
2900006 M M.RsoMepORFCP (1% identity) M.Rso234ORF2900006P
2900007 protein of unknown function
 
3770023 tryptophan synthase beta chain
3770024 M M.RsoY45ORFDP (0% identity) M.Rso234ORF3770024P
3770025 Tryptophan synthase alpha chain
 
chromosome IX
 
70001 conserved protein of unknown function
70002 RM Pae6077ORF4087P (0% identity) GAGGAC Rso239ORF70002P
70003 site-specific DNA recombinase; e14 prophage
 
150114 Tryptophan synthase alpha chain
150115 M M.RsoY45ORFDP (0% identity) M.Rso239ORF150115P
150116 tryptophan synthase beta chain
 
330002 protein of unknown function
330003 M M.RdeR2ORF423P (0% identity) M.Rso239ORF330003P
330004 ATPase domain-containing protein
 
700021 type III effector
700022 M M2.Rso244ORFCP (0% identity) M1.Rso239ORF700022P
700023 M M1.Rso44ORF1713P (0% identity) M2.Rso239ORF700022P
700024 conserved protein of unknown function
 
800010 conserved protein of unknown function
800011 V V.SdeCho1ORF20588P (0% identity) V.Rso239ORF800012P
800012 M M.Bps4308ORF3079P (0% identity) CCGCGG M.Rso239ORF800012P
800013 conserved protein of unknown function
 
1610001 conserved protein of unknown function
??? M M.RsoYC40ORF5368P (0% identity) M.Rso239ORF1610002P
1610004 dna modification methylase protein
 
??? hypothetical protein
1610004 M M1.RsoMepORFIP (0% identity) M.Rso239ORF1610004P
1610006 conserved protein of unknown function
 
chromosome V
 
620025 tryptophan synthase beta chain
620026 M M.RsoY45ORFDP (0% identity) M.Rso235ORF620026P
620027 Tryptophan synthase alpha chain
 
990033 phage excisionase
990034 M M.RsoMepORFCP (1% identity) M.Rso235ORF990034P
990035 protein of unknown function
 
1270034 type III effector
1270035 M M1.Rso238ORF700036P (1% identity) M1.Rso235ORF1270035P
1270036 M M2.Rso238ORF700036P (1% identity) M2.Rso235ORF1270035P
1270037 conserved protein of unknown function
 
1400010 protein of unknown function
1410001 M M1.Rso238ORF100005P (1% identity) M1.Rso234ORF1410001P
1410002 M M1.RsoMepORFIP (1% identity) M2.Rso234ORF1410001P
1420001 Serine protease
 
chromosome VI
 
290065 conserved protein of unknown function
290066 M M.RsoM7ORF1765P (1% identity) M.Rso236ORF290066P
290068 conserved protein of unknown function
 
290129 Tryptophan synthase alpha chain
290130 M M.RsoYC40ORF1590P (1% identity) M.Rso236ORF290130P
290131 tryptophan synthase beta chain
 
770001 protein of unknown function
770002 M M.RsoT02ORFGP (1% identity) M.Rso236ORF770002P
770003 conserved protein of unknown function
 
1160015 conserved protein of unknown function
1160016 M M2.RsoCQPS1ORF17745P (0% identity) M1.Rso236ORF1160016P
1160017 M M2.Rso244ORFCP (0% identity) M2.Rso236ORF1160016P
1160018 type III effector
 
1170013 conserved protein of unknown function
1170014 M M1.Rso244ORFCP (0% identity) M1.Rso236ORF1170014P
1170015 M M2.Rso232ORF2120001P (0% identity) M2.Rso236ORF1170014P
1170016 conserved protein of unknown function
 
chromosome VII
 
270029 protein of unknown function
270030 M M.RsoMepORFCP (1% identity) M.Rso237ORF270030P
270032 phage excisionase
 
850004 conserved protein of unknown function
850005 M M1.Rso238ORF100005P (1% identity) M1.Rso237ORF850005P
850006 M M1.RsoMepORFIP (1% identity) M2.Rso237ORF850005P
850008 conserved protein of unknown function
 
1690002 Tryptophan synthase alpha chain
1690003 M M.RsoY45ORFDP (0% identity) M.Rso237ORF1690003P
1690004 tryptophan synthase beta chain
 
2090003 type III effector
2090004 M M1.Rso238ORF700036P (1% identity) M1.Rso237ORF2090004P
2090005 M M2.Rso238ORF700036P (1% identity) M2.Rso237ORF2090004P
2090006 conserved protein of unknown function
 
chromosome VIII
 
100004 conserved protein of unknown function
100005 M M1.Rso237ORF850005P (1% identity) M1.Rso238ORF100005P
100006 M M1.RsoMepORFIP (1% identity) M2.Rso238ORF100005P
100008 conserved protein of unknown function
 
150033 Tryptophan synthase alpha chain
150034 M M.RsoY45ORFDP (0% identity) M.Rso238ORF150034P
150035 tryptophan synthase beta chain
 
700035 type III effector
700036 M M1.Rso237ORF2090004P (1% identity) M1.Rso238ORF700036P
700037 M M2.Rso237ORF2090004P (1% identity) M2.Rso238ORF700036P
700038 conserved protein of unknown function
 
780033 conserved protein of unknown function
780034 M M.Rso234ORF2200027P (1% identity) M.Rso238ORF780034P
780035 conserved exported protein of unknown function
 
850071 protein of unknown function
850072 M M.RsoMepORFCP (1% identity) M.Rso238ORF850072P
850075 phage integrase
Type IV
ORF Gene Most similar Specificity Name
 
chromosome IX
 
1150007 conserved protein of unknown function
1150008 R Rso1458MrrP (0% identity) Rso239MrrP
1150009 Diguanylate cyclase/phosphodiesterase (GGDEF EAL