Caedibacter varicaedens |
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Putative Caedibacter varicaedens RM systems
Ref: Suzuki,H. et al. Genome Announc 3 (6) (2015)
REBASE ref # 20985
GenBank #: BBVC00000000
REBASE acronym: CvaPb
Org_num: 17537
All begin Cva_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.FbaA5CORFDP (52% identity) | S.CvaPbORF1003P | |
| 1003 | M | M.MpoNDG2ORF1024P (81% identity) | M.CvaPbORF1003P | |
| 1004 | helix-turn-helix domain protein | |||
| 1427 | flagellar assembly protein H | |||
| 1428 | R | CvaPbORF1001P (56% identity) | CvaPbORF1428P | |
| 268 | R | type I restriction enzyme EcoR124II R protein | CvaPbORF268P | |
| 269 | type-1 restriction enzyme specificity | |||
| 268 | type I restriction enzyme EcoR124II R protein | |||
| 269 | S | S.Pba3428ORF727P (42% identity) | S.CvaPbORF269P | |
| 270 | type I restriction enzymeP M protein | |||
| 269 | type-1 restriction enzyme specificity | |||
| 270 | M | M.CvaPbORF1003P (77% identity) | M.CvaPbORF270P | |
| 271 | integration host factor subunit alpha | |||
| 1000 | 38 aa hypothetical protein | |||
| 1001 | R | Tmo45135ORFAP (63% identity) | CvaPbORF1001P | |
| 1002 | S | S.MvaSBORF79P (40% identity) | S.CvaPbORF1001P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 800 | M | M.CvaPbORF208P (56% identity) | GCGC | M.CvaPbORF800P |
| 801 | 218 aa hypothetical protein | |||
| 1384 | 196 aa hypothetical protein | |||
| 1385 | M | M.Tmo1544ORF1423P (58% identity) | M.CvaPbORF1385P | |
| 1386 | 134 aa hypothetical protein | |||
| 679 | 147 aa hypothetical protein | |||
| 680 | R | AspNG3ORF4075P (83% identity) | GDGCHC | CvaPbORF681P |
| 681 | M | M.AspNG3ORF4075P (63% identity) | GDGCHC | M.CvaPbORF681P |
| 682 | major Facilitator Superfamily protein | |||
| 207 | killing trait | |||
| 208 | M | M.CvaPbORF800P (56% identity) | GCGC | M.CvaPbORF208P |
| 209 | 78 aa hypothetical protein | |||
| 1631 | 45 aa hypothetical protein | |||
| 1632 | M | M.CvaPbORF800P (57% identity) | GCGC | M.CvaPbORF1632P |
| 1633 | terminase-like family protein | |||
| 417 | 86 aa hypothetical protein | |||
| 418 | M | modification methylase HaeIII | GGCC | M.CvaPbORF418P |
| 419 | DNA-cytosine methyltransferase | |||
| 418 | modification methylase HaeIII | |||
| 419 | M | M.AbaDC25ORF21460P (45% identity) | CCWGG | M.CvaPbORF419P |
| 420 | 101 aa hypothetical protein | |||
| 548 | 87 aa hypothetical protein | |||
| 549 | M | M.DvaCyL41ORF149P (75% identity) | GGCC | M.CvaPbORF549P |
| ??? | R | DvaCyL41ORF149P (62% identity) | GGCC | CvaPbORF549P |
| 551 | 52 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 118 | PD-(D/E)XK nuclease family transposase | |||
| 119 | R | DreMORF868P (35% identity) | CvaPbORF120P | |
| 120 | M | M.SspPET50ORFAP (54% identity) | M.CvaPbORF120P | |
| 121 | 36 aa hypothetical protein | |||