Pedobacter glucosidilyticus DD6b |
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Putative Pedobacter glucosidilyticus DD6b RM systems
Ref: Poehlein,A. et al. Stand Genomic Sci 10, 100 (2015)
REBASE ref # 20895
Contig set: 3,872,381 bp
GenBank #: JMTN00000000 (NZ_JMTN00000000)
REBASE acronym: PglDD6b
Org_num: 17476
All begin PBAC_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 26700 | quercetin 2,3-dioxygenase | |||
| 26710 | M | M.Bth236ORF12125P (47% identity) | M.PglDD6bORF26710P | |
| 26720 | S | S.IseJBKA6ORF1352P (48% identity) | S.PglDD6bORF26710P | |
| 26730 | 236 aa hypothetical protein | |||
| 26740 | 166 aa hypothetical protein | |||
| 26750 | 46 aa hypothetical protein | |||
| 26760 | R | MspBLZ2ORFIP (58% identity) | PglDD6bORF26710P | |
| 26770 | endoribonuclease YbeY | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 29450 | 29 aa hypothetical protein | |||
| 29460 | RM | PspCJ43ORF10680P (100% identity) | PglDD6bORF29460P | |
| 29470 | M | M.PspCJ43ORF10680P (100% identity) | M.PglDD6bORF29460P | |
| 29480 | Non-reducing end alpha-L-arabinofuranosidase | |||
| 29880 | branched-chain-amino-acid | |||
| 29890 | M | M.Ssp1A4ORFCP (82% identity) | M.PglDD6bORF29890P | |
| 29900 | 246 aa hypothetical protein | |||
| 22100 | 102 aa hypothetical protein | |||
| 22110 | M | M.CspCJ51ORFBP (69% identity) | GATC | M.PglDD6bORF22110P |
| 22120 | DGQHR domain protein | |||
| 17610 | 584 aa hypothetical protein | |||
| 17620 | RM | FspM13ORF19820P (77% identity) | PglDD6bORF17620P | |
| 17630 | divergent AAA domain protein | |||
| 20720 | fumarate reductase iron-sulfur subunit | |||
| 20730 | RM | PspCJ43ORF13805P (99% identity) | PglDD6bORF20730P | |
| 20740 | transposase | |||
| 8070 | 209 aa hypothetical protein | |||
| 8080 | RM | PspCJ43ORF9665P (100% identity) | PglDD6bORF8080P | |
| 8090 | 216 aa hypothetical protein | |||
| 11860 | cobaltochelatase subunit | |||
| 11870 | RM | FfaWV33ORF2850P (48% identity) | PglDD6bORF11870AP | |
| 11880 | 339 aa hypothetical protein | |||
| 11890 | RM | helicase | PglDD6bORF11870BP | |
| 11900 | 319 aa hypothetical protein | |||
| 17850 | 196 aa hypothetical protein | |||
| 17860 | RM | PspCJ43ORF4705P (97% identity) | PglDD6bORF17860P | |
| 17870 | miniconductance mechanosensitive channel YbdG | |||
| 4090 | AhpC/TSA family protein | |||
| 4100 | RM | PspCJ43ORF16615P (86% identity) | PglDD6bORF4100P | |
| 4110 | bifunctional transcriptional activator/DNA | |||