Rhodopseudomonas palustris TIE-1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Rhodopseudomonas palustris TIE-1 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 10676
| Sequence length: | GenBank #: | |
| Chromosome: | 5,744,041 bp | CP001096 (NC_011004) |
| Chromosome: | 5,740,580 bp | ABJR00000000 (NZ_ABJR00000000) |
REBASE acronym: RpaT
Org_num: 5110
All begin Rpal_, RpalDRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1500 | integrase family protein | |||
| 1501 | M | M.Tsp42S5ORF2340P (87% identity) | M.RpaTORF1501P | |
| 1502 | S | S.Msp11333ORF5320P (42% identity) | S.RpaTORF1501P | |
| 1503 | 177 aa conserved hypothetical protein | |||
| 1504 | R | Msp8IP (77% identity) | RpaTORF1501P | |
| 1506 | transcriptional regulator, XRE family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 351 | alpha/beta hydrolase fold | |||
| 352 | M | M.RpaIV (100% identity) | CTCGAG | M.RpaTORF352P |
| 353 | V | V.RpaIVP (100% identity) | V.RpaTORF352P | |
| 354 | 273 aa conserved hypothetical protein | |||
| 700 | 115 aa hypothetical protein | |||
| 701 | M | M.BspGIJORF10260P (67% identity) | M.RpaTORF701P | |
| 702 | 89 aa hypothetical protein | |||
| 1123 | 1177 aa conserved hypothetical protein | |||
| 1124 | RM | Bsp51670ORF28090AP (28% identity) | RpaTORF1124P | |
| 1125 | PglZ domain protein | |||
| 1217 | cytochrome b5 | |||
| 1218 | M | M.Rpak7ORF5240P (100% identity) | GANTC | M.RpaTORF1218P |
| 1219 | protein of unknown function zinc | |||
| 3856 | NAD(+) kinase | |||
| 3857 | RM | RpaTORF3857P (100% identity) | GRTGGAG | RpaTI |
| 3858 | short-chain dehydrogenase/reductase SDR | |||
| 3856 | NAD(+) kinase | |||
| 3857 | RM | RpaTI (100% identity) | GRTGGAG | RpaTORF3857P |
| 3858 | short-chain dehydrogenase/reductase SDR | |||
| 3923 | protein of unknown function DUF23 | |||
| 3924 | V | V.PflNEP1ORF20735P (49% identity) | V.RpaTORF3927P | |
| 3925 | protein of unknown function DUF87 | |||
| 3926 | 649 aa hypothetical protein | |||
| 3927 | M | M.SmcB1ORF669P (64% identity) | ACCGGT | M.RpaTORF3927P |
| 3928 | amidohydrolase | |||
| Chromosome | ||||
| 2604 | protein of unknown function DUF23 | |||
| 2605 | V | V.PflNEP1ORF20735P (49% identity) | V.RpaTORF3927P | |
| 2606 | protein of unknown function DUF87 | |||
| 3019 | 649 aa hypothetical protein | |||
| 2607 | M | M.SmcB1ORF669P (64% identity) | ACCGGT | M.RpaTORF3927P |
| 2608 | amidohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3801 | 219 aa hypothetical protein | |||
| 3802 | R | RpaB53ORF561P (89% identity) | RpaTORF3803P | |
| 3803 | M | M.Sba22271ORF15110P (64% identity) | M.RpaTORF3803P | |
| 3804 | SNF2-related protein | |||