Helicobacter pylori 29CaP |
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Putative Helicobacter pylori 29CaP RM systems
Ref: Mucito-Varela,E. et al. unpublished
REBASE ref # 21357
Complete sequence: 1,667,159 bp
GenBank #: CP012907
REBASE acronym: Hpy29
Org_num: 17403
All begin OA23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2280 | polyphosphate kinase | |||
| 2290 | S | S.HpyTW22ORF2200P (98% identity) | S.Hpy29ORF2295P | |
| 2295 | M | M.HpyF019ORF2320P (93% identity) | M.Hpy29ORF2295P | |
| 2300 | R | HpyF001ORF2290P (92% identity) | Hpy29ORF2295P | |
| 2305 | 631 aa hypothetical protein | |||
| 2840 | cadmium transporter | |||
| 2845 | S | S.HpyP001ORF7400P (88% identity) | S.Hpy29ORF2845P | |
| 2850 | 64 aa hypothetical protein | |||
| 7150 | cag pathogenicity island protein | |||
| 7155 | S | S.HpyPO105ORF7215P (97% identity) | S.Hpy29ORF7155P | |
| 7160 | formyltetrahydrofolate deformylase | |||
| 7670 | FAD-dependent thymidylate synthase | |||
| 7675 | S | S.HpyB14ORF6870P (37% identity) | S1.Hpy29ORF7730P | |
| 7680 | pseudogene | |||
| 7685 | toxin-antitoxin system, toxin component, HicA | |||
| 7690 | pseudogene | |||
| 7695 | pseudogene | |||
| 7700 | pseudogene | |||
| 7705 | pseudogene | |||
| 7710 | 61 aa hypothetical protein | |||
| 7715 | 72 aa hypothetical protein | |||
| 7720 | S | restriction endonuclease subunit S | S2.Hpy29ORF7730P | |
| 7725 | CAAX protease | |||
| 7730 | M | M.HpyC008ORF7295P (95% identity) | M.Hpy29ORF7730P | |
| 7735 | R | HpyI007ORF6855P (95% identity) | Hpy29ORF7730P | |
| 7740 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | agmatine deiminase | |||
| 270 | M | M1.HpyC105VIII (97% identity) | CCTC | M1.Hpy29ORF270P |
| 275 | M | M2.HpyBG10ORF320P (98% identity) | CCTC | M2.Hpy29ORF270P |
| 280 | proline:sodium symporter PutP | |||
| 470 | malonyl CoA-ACP transacylase | |||
| 480 | R | HpySP210VIIP (66% identity) | GATC | Hpy29ORF485P |
| 485 | M | M.HpyPO101V (97% identity) | GATC | M.Hpy29ORF485P |
| 490 | alpha-1,2-fucosyltransferase | |||
| 1395 | exodeoxyribonuclease VII large subunit | |||
| 1400 | M | M.HpyC001IX (98% identity) | TCGA | M.Hpy29ORF1400P |
| 1405 | 204 aa hypothetical protein | |||
| 1405 | 204 aa hypothetical protein | |||
| 1410 | R | Hpy464ORF1315P (95% identity) | CCGG | Hpy29ORF1415P |
| 1415 | M | M.HpyF020VI (98% identity) | CCGG | M.Hpy29ORF1415P |
| 1420 | ATP-dependent chaperone ClpB | |||
| 1650 | polysaccharide deacetylase | |||
| 1655 | R | HpyU205VIP (96% identity) | CTNAG | Hpy29ORF1660P |
| 1660 | M | M.HpyU205VI (99% identity) | CTNAG | M.Hpy29ORF1660P |
| 1665 | 125 aa hypothetical protein | |||
| 1860 | GTP-binding protein LepA | |||
| 1865 | M | M.HpySP506ORF1650P (100% identity) | GCNGC | M.Hpy29ORF1865P |
| 1870 | 93 aa hypothetical protein | |||
| 2365 | 366 aa hypothetical protein | |||
| 2370 | M | M.HpySP311ORF2255P (97% identity) | ATTAAT | M.Hpy29ORF2370P |
| 2375 | glycosyltransferase 9 family protein | |||
| 2380 | GTP-binding protein TypA | |||
| 2385 | M | M.HpyPOR115ORF2285P (98% identity) | ACGT | M.Hpy29ORF2385P |
| 2390 | R | HpyOK85ORFJP (98% identity) | ACGT | Hpy29ORF2385P |
| 2395 | catalase | |||
| 3415 | 270 aa hypothetical protein | |||
| 3420 | RM | HpyME28ORF3255P (76% identity) | Hpy29ORF3420P | |
| 3425 | glycerol-3-phosphate dehydrogenase | |||
| 4090 | 403 aa hypothetical protein | |||
| 4095 | R | HpyI008XIIIP (95% identity) | GTAC | Hpy29ORF4100P |
| 4100 | M | M.HpySP314X (98% identity) | GTAC | M.Hpy29ORF4100P |
| 4105 | DNA topoisomerase IV subunit B | |||
| 4305 | flagellar biosynthesis protein FlgE | |||
| 4310 | R | HpyNCI25VIIIP (99% identity) | GTNNAC | Hpy29ORF4320P |
| 4315 | type II restriction endonuclease subunit M | |||
| 4320 | M | M.Hpy5108ORF2945P (97% identity) | GTNNAC | M.Hpy29ORF4320P |
| 4325 | ATP-dependent DNA helicase | |||
| 5270 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5275 | M | M.HpySP306IX (96% identity) | TCNNGA | M.Hpy29ORF5275P |
| 5280 | R | HpyPE16ORF2485P (100% identity) | TCNNGA | Hpy29ORF5275P |
| 5285 | Laminin subunit alpha-2 precursor | |||
| 5465 | 144 aa hypothetical protein | |||
| 5470 | M | M.HpyPE113XIV (95% identity) | GCGC | M.Hpy29ORF5470P |
| 5475 | flagellar biosynthesis protein FlgM | |||
| 5925 | hydrolase | |||
| 5930 | M | M.HpyPR02I (98% identity) | CATG | M.Hpy29ORF5930P |
| 5935 | 94 aa hypothetical protein | |||
| 6835 | peptidase S41 | |||
| 6840 | R | HpyT005IXP (97% identity) | GANTC | Hpy29ORF6845P |
| 6845 | M | M.HpySP17III (79% identity) | GANTC | M.Hpy29ORF6845P |
| 6850 | pseudogene | |||
| 6865 | pseudogene | |||
| ??? | RM | HpyME10ORF6510P (94% identity) | Hpy29ORF6870P | |
| 6885 | nicotinate-nucleotide pyrophosphorylase | |||
| 7065 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7070 | M | M.HpySP413VIII (98% identity) | GAATTC | M.Hpy29ORF7070P |
| 7075 | R | HpyAR3VP (84% identity) | GAATTC | Hpy29ORF7070P |
| 7080 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7355 | 79 aa hypothetical protein | |||
| 7360 | M | M2.HpySP606IX (100% identity) | GGATG | M1.Hpy29ORF7360P |
| 7365 | M | M2.HpyPE101X (100% identity) | GGATG | M2.Hpy29ORF7360P |
| 7370 | R | HpyPE101XP (100% identity) | GGATG | Hpy29ORF7360P |
| 7375 | amidophosphoribosyltransferase | |||
| 7595 | 193 aa hypothetical protein | |||
| 7600 | RM | HpyB136AORF65P (89% identity) | Hpy29ORF7600P | |
| 7605 | DEAD/DEAH box helicase | |||
| 7815 | 67 aa hypothetical protein | |||
| 7820 | M | M.HpySP709XII (97% identity) | TGCA | M.Hpy29ORF7820P |
| 7825 | R | HpyH025IIIP (99% identity) | TGCA | Hpy29ORF7820P |
| 7830 | cytochrome C | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3790 | 54 aa hypothetical protein | |||
| 3795 | M | M.HpyU208ORF3830P (96% identity) | M.Hpy29ORF3795P | |
| 3800 | R | HpyGRE018ORF3015P (95% identity) | Hpy29ORF3795P | |
| 3805 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 6935 | two-component system response regulator | |||
| 6940 | M | M.HpySP209ORF6675P (94% identity) | M.Hpy29ORF6940P | |
| 6945 | R | HpyME43ORF6495P (94% identity) | Hpy29ORF6940P | |
| 6950 | rod shape-determining protein MreC | |||
| 7000 | endonuclease | |||
| 7005 | M | M.HpyL027ORF6560P (95% identity) | M.Hpy29ORF7005P | |
| 7010 | R | HpySWT12ORF6425P (89% identity) | Hpy29ORF7005P | |
| 7015 | biotin synthase | |||
| 7600 | 1189 aa hypothetical protein | |||
| 7605 | R | HpyME35ORF7260P (93% identity) | Hpy29ORF7610P | |
| ??? | M | M.HpyU204ORF7520P (96% identity) | M.Hpy29ORF7610P | |
| 7620 | ATP-dependent DNA helicase RecG | |||