Nostoc punctiforme PCC 73102 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Nostoc punctiforme PCC 73102 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10623
| Sequence length: | GenBank #: | |
| Chromosome: | 8,234,322 bp | CP001037 (NC_010628) |
| plasmid pNPUN01: | 354,564 bp | CP001038 (NC_010631) |
| plasmid pNPUN02: | 254,918 bp | CP001039 (NC_010632) |
REBASE acronym: Npu
Org_num: 3302
All begin Npun_AF, Npun_AR, Npun_BF, Npun_BR, Npun_F, Npun_R
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3327 | 152 aa conserved hypothetical protein | |||
| 3328 | S | S.BspAD24ORF10105P (47% identity) | S.NpuORF3329P | |
| 3329 | M | M.Bfr67BORF14065P (67% identity) | M.NpuORF3329P | |
| 3330 | 217 aa conserved hypothetical protein | |||
| 4896 | Helicase superfamily 3 | |||
| 4897 | R | Aci21ORF4110P (90% identity) | NpuORF4898P | |
| 4898 | M | M.Aci21ORF4110P (95% identity) | M.NpuORF4898P | |
| 4899 | 84 aa hypothetical protein | |||
| 4900 | plasmid stabilization system | |||
| 4901 | S | S.Llu27648I (36% identity) | S.NpuORF4898P | |
| 4902 | 329 aa hypothetical protein | |||
| 5276 | protein of unknown function DUF820 | |||
| ??? | S | M.Nsp870ORF21720P (38% identity) | S.NpuORF5281P | |
| 5279 | transposase, IS4 family protein | |||
| ??? | M | M.Nsp870ORF21720P (39% identity) | M.NpuORF5281P | |
| 5282 | diguanylate cyclase/phosphodiesterase | |||
| 5345 | 94 aa hypothetical protein | |||
| 5346 | C | C.Ncf36ORF19570P (61% identity) | C.NpuORF5347P | |
| 5347 | N-6 DNA methylase | |||
| 5348 | S | S.PspG382ORF14285P (37% identity) | S.NpuORF5347P | |
| 5349 | R | MspMP1ORF20525P (75% identity) | NpuORF5347P | |
| 5350 | crossover junction endodeoxyribonuclease RuvC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 700 | 158 aa conserved hypothetical protein | |||
| 701 | M | M.NspC057ORF8540P (96% identity) | GATC | M.NpuORF701P |
| 702 | protein of unknown function DUF751 | |||
| 1050 | FdxN element excision controlling factor | |||
| 1051 | M | M.Asp90ORF10012P (82% identity) | M.NpuORF1051P | |
| ??? | R | Asp90ORF10012P (83% identity) | NpuORF1051P | |
| 1054 | adenosylhomocysteinase | |||
| 1195 | anthranilate phosphoribosyltransferase | |||
| 1196 | M | M.NspN6ORF3207P (90% identity) | GGCC | M.NpuORF1196P |
| 1197 | phage Gp37Gp68 family protein | |||
| 2337 | PglZ domain protein | |||
| 2338 | RM | Aci21ORF57570P (84% identity) | NpuORF2338P | |
| 2339 | 757 aa hypothetical protein | |||
| 2472 | 108 aa conserved hypothetical protein | |||
| 2473 | M | M.Nsp53789ORF22630P (95% identity) | CMGCKG | M.NpuORF2473P |
| 2474 | extracellular solute-binding protein, family 5 | |||
| 2561 | 244 aa conserved hypothetical protein | |||
| 2562 | R | LspO77ORF4567P (87% identity) | CGTACG | NpuORF2563P |
| 2563 | M | M.LspO77ORF4567P (81% identity) | CGTACG | M.NpuORF2563P |
| 2564 | aminotransferase, class V | |||
| 2932 | lipid-A-disaccharide synthase | |||
| 2933 | M | M.Nsp53789ORF25035P (96% identity) | CGATCG | M.NpuORF2933P |
| 2934 | aldo/keto reductase | |||
| 3042 | 413 aa conserved hypothetical protein | |||
| 3043 | M | M.Cst7417ORF6325P (93% identity) | M.NpuORF3043P | |
| 3045 | sulphate transporter | |||
| 4342 | glycosyl transferase, group 1 | |||
| 4343 | M | M.Nsp53789ORF20885P (93% identity) | RCCGGY | M.NpuORF4343P |
| 4344 | deoxyribose-phosphate aldolase | |||
| 4490 | 532 aa conserved hypothetical protein | |||
| 4491 | M | M.Csp7507DndCP (93% identity) | M.NpuDndCP | |
| 4492 | IS200/IS605 family transposase | |||
| 4492 | IS200/IS605 family transposase | |||
| 4493 | M | M.NspC052DndDP (96% identity) | M.NpuDndDP | |
| 4494 | 128 aa conserved hypothetical protein | |||
| 4493 | 661 aa conserved hypothetical protein | |||
| 4494 | M | M.Ned1411DndEP (100% identity) | M.NpuDndEP | |
| 4495 | 485 aa conserved hypothetical protein | |||
| 4781 | precorrin-3B C17-methyltransferase | |||
| 4782 | C | C.Nsp24002ORF31200P (96% identity) | C.NpuORF4784P | |
| 4783 | R | Nsp5183ORF5160P (92% identity) | AGATCT | NpuORF4784P |
| 4784 | M | M.Ncf36ORF60140P (92% identity) | AGATCT | M.NpuORF4784P |
| 4785 | 129 aa conserved hypothetical protein | |||
| 5659 | 1179 aa conserved hypothetical protein | |||
| 5660 | RM | NspC052ORF36525P (81% identity) | NpuORF5660P | |
| 5661 | fdxN element excision controlling factor | |||
| 6309 | protein of unknown function DUF187 | |||
| 6310 | M | M.NspC057ORF12270P (90% identity) | GRCGYC | M.NpuORF6310P |
| 6311 | R | Asp7108ORFJP (72% identity) | GRCGYC | NpuORF6310P |
| 6313 | magnesium chelatase ATPase subunit I | |||
| plasmid pNPUN01 | ||||
| 146 | protein of unknown function DUF1392 | |||
| 147 | M | M.NspN6ORF2172P (80% identity) | GTCGAC | M.NpuORF147P |
| 148 | 78 aa conserved hypothetical protein | |||
| 268 | 81 aa hypothetical protein | |||
| 269 | RM | Tsp7712ORF28315P (73% identity) | NpuORF269P | |
| 270 | helicase domain protein | |||
| plasmid pNPUN02 | ||||
| 90 | helicase domain protein | |||
| 91 | RM | NspHK01ORF60740P (82% identity) | NpuORF91P | |
| 92 | 149 aa hypothetical protein | |||
| 119 | 134 aa conserved hypothetical protein | |||
| ??? | M | M.NpuORF147P (49% identity) | M.NpuORF120AP | |
| 121 | pseudogene | |||
| ??? | M | M.NspNUC1ORF7062P (24% identity) | M.NpuORF120BP | |
| 123 | transposase, IS4 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4725 | 201 aa hypothetical protein | |||
| 4726 | R | Csp2100McrBP (58% identity) | NpuMcrBP | |
| ??? | R | NspKEnMcrCP (70% identity) | NpuMcrCP | |
| 4728 | transposase, IS4 family protein | |||