Halomonas meridiana R1t3 |
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Putative Halomonas meridiana R1t3 RM systems
Ref: Meyer,J.L. et al. Stand Genomic Sci 10, 75 (2015)
REBASE ref # 20693
Contig set: 3,471,965 bp
GenBank #: JZEM00000000 (NZ_JZEM00000000)
REBASE acronym: HmeR123
Org_num: 17245
All begin VE30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16115 | 570 aa hypothetical protein | |||
| 16120 | R | HspXH26ORF15100P (37% identity) | HmeR123ORF16120P | |
| ??? | R | Hsp6E8ORF1420P (57% identity) | HmeR123ORF5815P | |
| 5820 | metal-dependent hydrolase | |||
| 12650 | N-ethylmaleimide reductase | |||
| 12655 | R | Hmeme2ORF20340P (99% identity) | HmeR123ORF12680P | |
| 12660 | S | S.Hmeme2ORF20340P (46% identity) | S.HmeR123ORF12680P | |
| 12665 | chromosome segregation protein SMC | |||
| 12670 | 259 aa hypothetical protein | |||
| 12675 | transcriptional regulator | |||
| 12680 | M | M.Hmeme2ORF20340P (100% identity) | M.HmeR123ORF12680P | |
| 12685 | 124 aa hypothetical protein | |||
| 9840 | 72 aa hypothetical protein | |||
| 9845 | S | S.Hme801ORF3840P (68% identity) | S.HmeR123ORF9850P | |
| 9850 | M | M.MspC1S70ORF17330P (97% identity) | M.HmeR123ORF9850P | |
| 9855 | R | HaxL8ORFBP (97% identity) | HmeR123ORF9850P | |
| 9860 | 126 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13110 | hemolysin | |||
| 13115 | RM | HaxL8ORFGP (87% identity) | HmeR123ORF13115P | |
| 13120 | 249 aa hypothetical protein | |||
| 5365 | 110 aa hypothetical protein | |||
| 5370 | RM | Hax15723ORF6010P (99% identity) | HmeR123ORF5370P | |
| 5375 | integrase | |||
| 2135 | 74 aa hypothetical protein | |||
| 2140 | M | M.HhyY2ORF9265P (89% identity) | TGGCCA | M.HmeR123ORF2140P |
| 2145 | 63 aa hypothetical protein | |||
| 375 | 74 aa hypothetical protein | |||
| 380 | M | M.HpiHN2ORFAP (65% identity) | AB | M.HmeR123ORF380P |
| 385 | capsid portal protein | |||
| 2195 | 210 aa hypothetical protein | |||
| 2200 | M | M.Hve7ORF9115P (95% identity) | M.HmeR123ORF2200P | |
| 2205 | 171 aa hypothetical protein | |||
| 545 | 124 aa hypothetical protein | |||
| 550 | M | M.Hhy5445ORF4195P (98% identity) | GCCGGC | M.HmeR123ORF550P |
| 555 | R | Hsp001ORF1385P (98% identity) | GCCGGC | HmeR123ORF550P |
| 560 | DNA methyltransferase | |||
| 555 | restriction endonuclease NgoMIV | |||
| 560 | M | M.HveSND01ORF1445P (86% identity) | RGATCY | M.HmeR123ORF560P |
| 565 | 401 aa hypothetical protein | |||
| 4520 | ATP-binding protein | |||
| 4525 | M | M.Hme801ORF33290P (98% identity) | M.HmeR123ORF4525P | |
| 4530 | 545 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16225 | R | Mse7287ORF12630P (28% identity) | HmeR123ORF16230P | |
| 16230 | M | 177 aa hypothetical protein | M.HmeR123ORF16230P | |
| 15140 | ATP-dependent helicase | |||
| 15145 | M | M.Hmeme2ORF1280P (31% identity) | M.HmeR123ORF15145P | |
| 9285 | transcriptional regulator | |||
| 9290 | R | Hax15723ORF23740P (99% identity) | HmeR123ORF9300P | |
| 9295 | transcriptional regulator | |||
| 9300 | M | M.Sxi6416ORF11965P (65% identity) | M.HmeR123ORF9300P | |
| 9305 | serine protease | |||
| 8560 | glucose-6-phosphate isomerase | |||
| 8565 | R | Hme801ORF12810P (57% identity) | HmeR123ORF8565P | |