Treponema phagedenis V1 |
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Putative Treponema phagedenis V1 RM systems
Ref: Manzoor,Shahid. and Zubair,Saima. unpublished
REBASE ref # 20503
Contig set: 3,129,609 bp
GenBank #: CDNC00000000 (NZ_CDNC00000000)
REBASE acronym: TphV1
Org_num: 17138
All begin TPHV1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 30176 | 66 aa conserved hypothetical protein | |||
| 30177 | M | M.TphRORF8890P (100% identity) | M.TphV1ORF30177P | |
| 30178 | Virulence protein | |||
| 30179 | 48 aa hypothetical protein | |||
| 30180 | 49 aa conserved hypothetical protein | |||
| 30181 | S | S1.TphS85ORF13530P (65% identity) | S.TphV1ORF30177P | |
| 30182 | R | TphRORF8890P (100% identity) | TphV1ORF30177P | |
| 30183 | conserved membrane hypothetical protein | |||
| 40162 | Uracil permease (fragment) | |||
| 40163 | M | M.TphT320AORF10550P (100% identity) | M.TphV1ORF40163P | |
| 40164 | Helicase C-terminal domain protein (fragment) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 510001 | M | M1.TphS85ORF13995P (87% identity) | CCSGG | M1.TphV1ORF510001P |
| 510002 | M | M2.TphT320AORF11840P (100% identity) | CCSGG | M2.TphV1ORF510001P |
| 510003 | 62 aa conserved hypothetical protein | |||
| 370009 | exported hypothetical protein | |||
| ??? | M | M.TphT320AORF9690P (100% identity) | CGCG | M.TphV1ORF370010P |
| 370012 | 213 aa conserved hypothetical protein | |||
| 290007 | 89 aa conserved hypothetical protein | |||
| ??? | R | TphS85ORF11405P (100% identity) | GGNCC | TphV1ORF290010P |
| 290010 | M | M.TphT320AORF7980P (99% identity) | GGNCC | M.TphV1ORF290010P |
| 290011 | conserved exported hypothetical protein | |||
| 260014 | conserved membrane hypothetical protein | |||
| 260015 | M | M.TphS85ORF1515P (100% identity) | RAATTY | M.TphV1ORF260015P |
| 260016 | Tetratricopeptide repeat protein | |||
| 20027 | 76 aa conserved hypothetical protein | |||
| 20028 | S | S.Sps7493ORF4300P (39% identity) | S1.TphV1ORF20030P | |
| 20029 | S | Sde27941ORF245P (13% identity) | S2.TphV1ORF20030P | |
| 20030 | RM | TphS85ORF3955P (97% identity) | TphV1ORF20030P | |
| 20031 | C | C.Lsp3170ORFAP (77% identity) | C.TphV1ORF20030P | |
| 20032 | 52 aa conserved hypothetical protein | |||
| 20036 | 103 aa conserved hypothetical protein | |||
| 20037 | R | TphT320AORF5230P (97% identity) | GATC | TphV1ORF20037P |
| 20038 | M | M.TphT320AORF5230P (100% identity) | GATC | M.TphV1ORF20037P |
| 20039 | C | C.TphT320AORF5230P (100% identity) | C.TphV1ORF20037P | |
| 20040 | Replication initiator protein A, N-terminal | |||
| 30069 | 39 aa conserved hypothetical protein | |||
| 30070 | M | M.TphT320AORF8370P (95% identity) | GTSAC | M.TphV1ORF30070P |
| 30071 | conserved membrane hypothetical protein | |||
| 30074 | 128 aa conserved hypothetical protein | |||
| ??? | M | M.TphS23ORF7400P (64% identity) | M.TphV1ORF30075P | |
| 30077 | 246 aa conserved hypothetical protein | |||
| 30080 | 42 aa hypothetical protein | |||
| 30081 | M | M.TphB431ORF2280P (82% identity) | M.TphV1ORF30081P | |
| 30082 | 109 aa hypothetical protein | |||
| 30082 | 109 aa hypothetical protein | |||
| 30083 | M | M.TphS85ORF410P (21% identity) | M.TphV1ORF30083P | |
| 30084 | 52 aa hypothetical protein | |||
| 40107 | Uncharacterized ABC transporter ATP-binding | |||
| 40108 | M | M.TphT320AORF10280P (100% identity) | M.TphV1ORF40108P | |
| 40109 | MjaII restriction endonuclease | |||
| 30138 | 184 aa conserved hypothetical protein | |||
| 30139 | M | M.TphS23ORF630P (100% identity) | M.TphV1ORF30139P | |
| 30140 | 54 aa hypothetical protein | |||
| 10166 | 76 aa hypothetical protein | |||
| ??? | M | M.TphT320AORF785P (94% identity) | M.TphV1ORF10167P | |
| 10170 | 98 aa conserved hypothetical protein | |||
| 10171 | 140 aa hypothetical protein | |||
| 10172 | M | M.TphT320AORF800P (98% identity) | M.TphV1ORF10172P | |
| 10173 | 54 aa hypothetical protein | |||
| ??? | R | TphT320AORF785P (99% identity) | TphV1ORF10172P | |
| 10176 | 63 aa conserved hypothetical protein | |||
| 10185 | 180 aa hypothetical protein | |||
| ??? | M | M.TphKS1AORF3265P (75% identity) | M.TphV1ORF10186P | |
| 10187 | 151 aa hypothetical protein | |||
| 20196 | DNA-binding helix-turn-helix protein | |||
| 20197 | RM | TphS23ORF7595P (98% identity) | TphV1ORF20197P | |
| 20198 | S | S.TphT320AORF6005P (98% identity) | S.TphV1ORF20197P | |
| 20199 | 121 aa conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90022 | 50 aa hypothetical protein | |||
| 90023 | R | TphS85ORF3440P (99% identity) | TphV1ORF90024P | |
| 90024 | M | M.TphT320AORF13960P (97% identity) | M.TphV1ORF90024P | |
| 90025 | 689 aa conserved hypothetical protein | |||
| 140024 | 58 aa hypothetical protein | |||
| 140025 | R | TphRORF2105P (99% identity) | TphV1ORF140026P | |
| 140026 | M | M.TphKS1ORF1030P (99% identity) | M.TphV1ORF140026P | |
| 140027 | 73 aa conserved hypothetical protein | |||
| 90052 | Cro/C1-type HTH DNA-binding domain protein | |||
| 90053 | M | M.TphT320AORF14105P (100% identity) | M.TphV1ORF90053P | |
| 90054 | conserved membrane hypothetical protein | |||