Salmonella enterica subsp. enterica serovar Agona 16.H.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 16.H.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,739,601 bp
GenBank #: CATY00000000 (NZ_CATY00000000)
REBASE acronym: Sen16H08
Org_num: 16246
All begin SA16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3802 | protein TIR | |||
| 3803 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen16H08ORF3803P |
| 3804 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen16H08ORF3803P |
| 3805 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen16H08ORF3803P |
| 3806 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen16H08ORF3803P |
| 3807 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3786 | 97 aa hypothetical protein | |||
| 3787 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen16H08ORF3787P |
| 3788 | 670 aa hypothetical protein | |||
| 1588 | metal dependent phosphohydrolase | |||
| 1589 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen16H08DcmP |
| 1590 | V | V.StyUK1DcmP (100% identity) | V.Sen16H08DcmP | |
| 1591 | carboxylate/amino acid/amine transporter | |||
| 4641 | ribulose-phosphate 3-epimerase | |||
| 4642 | M | DNA adenine methylase | GATC | M.Sen16H08DamP |
| 4643 | protein DamX | |||
| 2110 | periplasmic protein | |||
| 2111 | M | DNA methylase | ATGCAT | M.Sen16H08ORF2111P |
| 2112 | DNA-binding protein Fis | |||
| 67 | bacteriophage replication gene A | |||
| ??? | M | M.SenG094ORF11761P (100% identity) | GATC | M.Sen16H08ORFAP |
| 68 | DksA/TraR family C4-type zinc finger protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2497 | cyanide-insensitive oxidase CioA | |||
| 2498 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen16H08ORF2499P |
| 2499 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen16H08ORF2499P |
| 2500 | major facilitator superfamily MFS_1 | |||