Salmonella enterica subsp. enterica serovar Agona 04.O.05 |
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Putative Salmonella enterica subsp. enterica serovar Agona 04.O.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,785,217 bp
GenBank #: CATN00000000 (NZ_CATN00000000)
REBASE acronym: Sen04O05
Org_num: 16238
All begin SA04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3385 | protein TIR | |||
| 3386 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen04O05ORF3386P |
| 3387 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen04O05ORF3386P |
| 3388 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen04O05ORF3386P |
| 3389 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen04O05ORF3386P |
| 3390 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3369 | 97 aa hypothetical protein | |||
| 3370 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen04O05ORF3370P |
| 3371 | 670 aa hypothetical protein | |||
| 4200 | metal dependent phosphohydrolase | |||
| 4201 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen04O05DcmP |
| 4202 | V | very short patch repair protein | V.Sen04O05DcmP | |
| 4203 | carboxylate/amino acid/amine transporter | |||
| 1720 | periplasmic protein | |||
| 1721 | M | DNA methylase | ATGCAT | M.Sen04O05ORF1721P |
| 1722 | DNA-binding protein Fis | |||
| 4700 | protein DamX | |||
| 4701 | M | DNA adenine methylase | GATC | M.Sen04O05DamP |
| 4702 | ribulose-phosphate 3-epimerase | |||
| 840 | 113 aa hypothetical protein | |||
| 841 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen04O05ORF841P |
| 842 | bacteriophage replication gene A | |||
| 843 | 62 aa hypothetical protein | |||
| 844 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen04O05ORF844P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen04O05ORF844P |
| 846 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3983 | major facilitator superfamily MFS_1 | |||
| 3984 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen04O05ORF3984P |
| 3985 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen04O05ORF3984P |
| 3986 | cyanide-insensitive oxidase CioA | |||