Pseudomonas syringae pv. actinidiae ICMP 18884 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pseudomonas syringae pv. actinidiae ICMP 18884 RM systems
Ref: McCann,H.C. et al. PLoS Pathog. 9 (7), E1003503 (2013)
REBASE ref # 20167
Complete sequence: 6,555,569 bp
GenBank #: CP011972
REBASE acronym: Psy18884
Org_num: 16385
All begin IYO_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20 | DNA gyrase subunit B | |||
| 25 | M | M.PsyQSY6ORFBP (100% identity) | AGCANNNNNGTC | M.Psy18884I |
| ??? | S | S.PsyQSY6ORFBP (100% identity) | AGCANNNNNGTC | S.Psy18884I |
| 35 | R | PsyQSY6ORFBP (100% identity) | AGCANNNNNGTC | Psy18884IP |
| 40 | 428 aa hypothetical protein | |||
| 125 | helicase | |||
| 130 | M | M.PsyQSY6ORFGAP (100% identity) | GAYCNNNNNCTGC | M.Psy18884ORF130AP |
| 135 | transposase | |||
| 140 | transposase | |||
| 145 | M | M.PsyQSY6ORF29P (100% identity) | GAYCNNNNNCTGC | M.Psy18884ORF130BP |
| 150 | S | S1.PsyYXH1ORFAP (100% identity) | GAYCNNNNNCTGC | S.Psy18884ORF130P |
| 155 | R | PsyYXH1ORFAP (100% identity) | GAYCNNNNNCTGC | Psy18884ORF130P |
| 160 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 850 | magnesium chelatase | |||
| 855 | M | M.PsyYXH1ORFFP (100% identity) | CTCGAG | M.Psy18884II |
| 860 | 236 aa hypothetical protein | |||
| 860 | 236 aa hypothetical protein | |||
| 865 | R | PsyYXH1ORFFP (100% identity) | CTCGAG | Psy18884ORFP |
| 870 | magnesium chelatase | |||
| 5200 | transposase | |||
| ??? | RM | PsyQSY6ORFEP (100% identity) | Psy18884ORF5205P | |
| 5220 | ATP-dependent helicase | |||
| 5205 | 78 aa hypothetical protein | |||
| 5210 | RM | Psy708NZORF5205AP (100% identity) | Psy18884ORF5210AP | |
| 5215 | RM | PsyYXH1ORFEP (60% identity) | Psy18884ORF5210BP | |
| 5220 | ATP-dependent helicase | |||
| 24785 | 64 aa hypothetical protein | |||
| 24790 | M | M.PsyQSY6ORFAP (91% identity) | CCNGG | M.Psy18884ORF24790P |
| 24795 | 71 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8550 | membrane-associated oxidoreductase | |||
| 8555 | M | M.PsyYXH1ORFCP (100% identity) | M.Psy18884ORF8555P | |
| 8560 | 256 aa hypothetical protein | |||
| 8565 | R | PsyYXH1ORFCP (100% identity) | Psy18884ORF8555P | |
| 8570 | 100 aa hypothetical protein | |||