Vibrio cholerae TSY216 |
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Putative Vibrio cholerae TSY216 RM systems
Ref: Okada,K. et al. Emerging Infect. Dis. 21 (7), 1262-1263 (2015)
REBASE ref # 19921
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,053,204 bp | CP007653 |
| chromosome 2: | 1,051,284 bp | CP007654 |
| chromosome 3: | 896,006 bp | CP007655 |
REBASE acronym: Vch216
Org_num: 15990
All begin EN12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2940 | 316 aa hypothetical protein | |||
| 2945 | M | M.VchSXTORFAP (100% identity) | M.Vch216ORF2945P | |
| 2950 | S | S.VchSXTORFAP (100% identity) | S.Vch216ORF2945P | |
| 2955 | bstXI restriction endonuclease | |||
| 2955 | bstXI restriction endonuclease | |||
| 2960 | R | VchSXTORFAP (100% identity) | Vch216ORF2960P | |
| 2965 | ATPase AAA | |||
| 8560 | membrane protein | |||
| 8565 | R | VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | Vch216ORF8585P |
| 8570 | 663 aa hypothetical protein | |||
| 8575 | 470 aa hypothetical protein | |||
| 8580 | S | S.VspNIH41ORF1746P (99% identity) | AAGNNNNNNCATC | S.Vch216ORF8585P |
| 8585 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.Vch216ORF8585P |
| 8590 | 687 aa hypothetical protein | |||
| chromosome 3 | ||||
| 23590 | 75 aa hypothetical protein | |||
| 23595 | S | S.Cco1377ORFHP (27% identity) | S.Vch216ORF23600P | |
| 23600 | 698 aa hypothetical protein | |||
| 23605 | R | Fsp2541ORF6860P (16% identity) | Vch216ORF23600P | |
| 23615 | 108 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2950 | restriction endonuclease subunit S | |||
| 2955 | R | VchSXTORFBP (100% identity) | Vch216ORF2955P | |
| 2960 | DEAD/DEAH box helicase | |||
| 12755 | ribulose-phosphate 3-epimerase | |||
| 12760 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch216DamP |
| 12765 | cell division protein DamX | |||
| chromosome 2 | ||||
| 14985 | guanosine 5-monophosphate oxidoreductase | |||
| ??? | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.Vch216ORF14990P |
| 14995 | 638 aa hypothetical protein | |||
| 15950 | hemagglutinin | |||
| 15955 | M | M.VspNIH41ORF3529P (94% identity) | M.Vch216ORF15955P | |
| 15960 | 141 aa hypothetical protein | |||
| chromosome 3 | ||||
| 21555 | 208 aa hypothetical protein | |||
| 21560 | M | M.Vvu053ORF4992P (98% identity) | GGNCC | M.Vch216ORF21560P |
| 21565 | 415 aa hypothetical protein | |||
| 24205 | 128 aa hypothetical protein | |||
| 24210 | M | M.Vvu36ORF4940P (98% identity) | CCNGG | M.Vch216ORF24210P |
| 24215 | 82 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2960 | DEAD/DEAH box helicase | |||
| 2965 | R | VchSXTMcrBP (100% identity) | Vch216McrBP | |
| 2970 | R | VchSXTMcrCP (100% identity) | Vch216McrCP | |
| 2975 | restriction endonuclease | |||
| 2970 | restriction endonuclease | |||
| 2975 | R | SxiVS1MrrP (100% identity) | Vch216MrrP | |
| 2980 | 93 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 3 | ||||
| 20375 | 209 aa hypothetical protein | |||
| 20380 | M | M.Vph998ORF25295P (99% identity) | GATC | M.Vch216ORF20380P |
| 20385 | 172 aa hypothetical protein | |||