Halobacterium salinarum R1; DSM 671 |
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Putative Halobacterium salinarum R1; DSM 671 RM systems
Ref: Pfeiffer,F. et al. Genomics (2008) In press
REBASE ref # 10485
| Sequence length: | GenBank #: | |
| Chromosome: | 2,000,962 bp | AM774415 (NC_010364) |
| plasmid PHS1: | 147,625 bp | AM774416 (NC_010366) |
| plasmid PHS3: | 284,332 bp | AM774418 (NC_010368) |
| plasmid PHS4: | 40,894 bp | AM774419 (NC_010367) |
REBASE acronym: HsaR1
Org_num: 4988
All begin OE_, OE_1169A, OE_7181B, OE_8012B, OE_ISH
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1 | 34 aa hypothetical protein | |||
| ??? | M | M.HspNI (41% identity) | CAGNNNNNNTGCT | M.HsaR1ORF1171AP |
| 8 | pseudogene | |||
| 1173 | ISH8-type transposase ISH8 | |||
| ??? | M | M.HspNI (58% identity) | CAGNNNNNNTGCT | M.HsaR1ORF1171BP |
| 1177 | S | S.HspNI (100% identity) | CAGNNNNNNTGCT | S.HsaR1ORF1171P |
| ??? | R | HspS9ORFCP (100% identity) | CAGNNNNNNTGCT | HsaR1ORF1171P |
| 1182 | DUF45 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3196 | succinate--CoA ligase (ADP-forming) alpha | |||
| 3197 | M | M.HspS9I (100% identity) | CTAG | M.HsaR1I |
| 3200 | chloride channel protein | |||
| plasmid PHS1 | ||||
| 1 | uncharacterized protein | |||
| 7182 | RM | HsaR1ORF8013P (100% identity) | HsaR1ORF7182P | |
| 7185 | ATP-dependent helicase | |||
| plasmid PHS3 | ||||
| 5349 | uncharacterized protein | |||
| 5350 | RM | Hsa3ORF12070P (100% identity) | HsaR1ORF5350P | |
| 5358 | AAA family ATPase | |||
| plasmid PHS4 | ||||
| 1 | uncharacterized protein | |||
| 8013 | RM | HsaR1ORF7182P (100% identity) | HsaR1ORF8013P | |
| 8016 | ATP-dependent helicase | |||