Escherichia coli APEC O18 |
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Putative Escherichia coli APEC O18 RM systems
Ref: Mangiamele,P.M. et al. unpublished
REBASE ref # 19767
Complete sequence: 5,006,568 bp
GenBank #: CP006830
REBASE acronym: EcoO18
Org_num: 15734
All begin APECO18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18255 | endoribonuclease SymE | |||
| 18260 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoO18ORF18265P |
| 18265 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoO18ORF18265P |
| 18270 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | EcoO18ORF18265P |
| 18275 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1640 | 94 aa hypothetical protein | |||
| 1645 | M | M.EcoMS211ORF11760P (99% identity) | A | M.EcoO18ORF1645P |
| 1665 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 4845 | multidrug transporter | |||
| 4850 | V | V.SflC32DcmP (74% identity) | V.EcoO18DcmP | |
| 4855 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoO18DcmP |
| 4860 | hydrolase | |||
| 8285 | pseudogene | |||
| 8290 | M | M.EcoC9124ORFAP (100% identity) | GATC | M.EcoO18ORF8290P |
| 8295 | 64 aa hypothetical protein | |||
| 9100 | LexA family transcriptional regulator | |||
| 9105 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoO18ORF9105P |
| 9110 | 164 aa hypothetical protein | |||
| 12440 | Fis family transcriptional regulator | |||
| 12445 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoO18ORF12445P |
| 12450 | 59 aa hypothetical protein | |||
| 13040 | ribulose-phosphate 3-epimerase | |||
| 13045 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoO18DamP |
| 13050 | cell division protein DamX | |||
| 21315 | 64 aa hypothetical protein | |||
| 21320 | M | M.EcosE1ORFAP (100% identity) | M.EcoO18ORF21320P | |
| 21325 | 64 aa hypothetical protein | |||
| 22910 | 75 aa hypothetical protein | |||
| 22915 | M | M.EcoS56ORF14280P (99% identity) | GATC | M.EcoO18ORF22915P |
| 22920 | replication endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8900 | pseudogene | |||
| 8905 | R | EspFAAGmrSDP (100% identity) | EcoO18GmrSD2P | |
| 8910 | DNA-invertase | |||
| 18270 | DEAD/DEAH box helicase | |||
| 18275 | R | EcosS1MrrP (100% identity) | EcoO18MrrP | |
| 18280 | GTP-binding protein YjiA | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 805 | 146 aa hypothetical protein | |||
| 810 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoO18ORF810P |
| 815 | protein ninE | |||