|
Putative Vibrio cholerae RM systems
Ref: Jones S,Lim. unpublished
REBASE ref # 19999
Sequence length: | GenBank #: | |
chromosome I: | 2,976,768 bp | LT897797 |
plasmid pNDM-116-14: | 354,308 bp | LN831184 |
plasmid pNDM-116-17: | 167,382 bp | LN831185 |
REBASE acronym: Vch11614
Org_num: 16110
All begin VCBK1071_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
1942 | hemin importer ATP-binding subunit | |||
1943 | S | S.Vch5434ORF12520P (69% identity) | S.Vch1071ORF1944P | |
1944 | M | M.Vci139882ORFBP (97% identity) | M.Vch1071ORF1944P | |
1945 | R | Vci139882ORFBP (99% identity) | Vch1071ORF1944P | |
1946 | EcoKMrr | |||
plasmid pNDM-116-14 | ||||
??? | 164 aa hypothetical protein | |||
??? | M | M.SchDC57ORF5385P (98% identity) | M.Vch11614ORFAP | |
??? | S | S.PspHL130ORF4680P (57% identity) | S.Vch11614ORFAP | |
??? | Type I restriction-modification system, | |||
??? | R | VchVCC19ORFDP (99% identity) | Vch11614ORFAP | |
??? | 209 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
302 | cell division protein DamX | |||
303 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch1071DamP |
304 | Ribulose-phosphate 3-epimerase | |||
2633 | HSP90 family protein | |||
2634 | M | M.Vpas10329ORF1865P (100% identity) | M.Vch1071ORF2634P | |
2635 | DNA repair protein RadC | |||
plasmid pNDM-116-14 | ||||
??? | 103 aa hypothetical protein | |||
??? | M | M.VpaVP92ORFBP (90% identity) | YGGCCR | M.Vch11614ORFBP |
??? | ATP-dependent DNA helicase UvrD/PcrA | |||
plasmid pNDM-116-17 | ||||
??? | 80 aa hypothetical protein | |||
??? | M | M.Sma1978ORFAP (97% identity) | M.Vch11614ORFCP | |
??? | 149 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
1945 | Type-1 restriction enzyme R protein | |||
1946 | R | Vch5434MrrP (100% identity) | Vch1071MrrP | |
1947 | Competence protein |