Salmonella enterica subsp. enterica YU39 |
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Putative Salmonella enterica subsp. enterica YU39 RM systems
Ref: Calva,E. et al. unpublished
REBASE ref # 20059
| Sequence length: | GenBank #: | |
| Chromosome: | 4,886,081 bp | CP011428 |
| plasmid pYU39_89: | 88,949 bp | CP011430 |
REBASE acronym: SenYU39
Org_num: 15532
All begin SE14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4770 | endoribonuclease SymE | |||
| 4772 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenYU39ORF4773P |
| 4773 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenYU39ORF4773P |
| 4774 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenYU39ORF4773P |
| 4775 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1895 | disulfide bond formation protein B | |||
| ??? | M | M.SenSL26ORF9475P (100% identity) | M.SenYU39ORF1896P | |
| 1897 | TM2 domain-containing protein | |||
| 2132 | integral membrane protein | |||
| 2133 | V | V.StyUK1DcmP (100% identity) | V.SenYU39DcmP | |
| 2134 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenYU39DcmP |
| 2135 | metal-dependent phosphohydrolase | |||
| 2182 | crossover junction protein | |||
| 2183 | M | M.StyUK1V (100% identity) | GATC | M.SenYU39ORF2183P |
| 2184 | transcriptional activator | |||
| 2842 | Eaa protein | |||
| 2843 | M | M.Sen8545ORF5895P (100% identity) | M.SenYU39ORF2843P | |
| 2844 | 260 aa hypothetical protein | |||
| 3595 | DNA-binding protein Fis | |||
| 3596 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenYU39ORF3596P |
| 3597 | 54 aa hypothetical protein | |||
| 3698 | ribulose-phosphate 3-epimerase | |||
| 3699 | M | M.StyTDamP (100% identity) | GATC | M.SenYU39DamP |
| 3700 | DamX protein | |||
| 4737 | ABC-type sugar/spermidine/putrescine | |||
| 4738 | RM | StyUK1IV (100% identity) | GATCAG | SenYU39ORF4738P |
| 4739 | DNA repair ATPase | |||
| plasmid pYU39_89 | ||||
| 5082 | 226 aa hypothetical protein | |||
| 5083 | M | M.SenYU0718ORF25295P (100% identity) | M.SenYU39ORF5083P | |
| 5084 | glutaminyl-tRNA synthetase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 434 | sialic acid transporter | |||
| 435 | M | M.StyUK1I (100% identity) | CAGAG | M.SenYU39ORF435P |
| 436 | R | StyUK1IP (99% identity) | CAGAG | SenYU39ORF435P |
| 437 | cytoplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4774 | type I restriction enzyme EcoKI subunit R | |||
| 4775 | R | StyUK1MrrP (100% identity) | SenYU39MrrP | |
| 4776 | inner membrane protein | |||