Salmonella enterica subsp. enterica serovar Typhimurium CDC 2011K-0870 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium CDC 2011K-0870 RM systems
Ref: Harhay,D.M. et al. unpublished
REBASE ref # 19415
Complete sequence: 4,769,471 bp
GenBank #: CP007523
REBASE acronym: Sen870
Org_num: 15294
All begin AX05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6530 | Endoribonuclease symE | |||
| ??? | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen870ORF6560P |
| 6560 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen870ORF6560P |
| 6570 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen870ORF6560P |
| 6580 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6190 | 363 aa hypothetical protein | |||
| 6200 | RM | StyUK1IV (100% identity) | GATCAG | Sen870II |
| 6210 | DNA repair ATPase | |||
| 27400 | inner membrane transporter yedA | |||
| 27410 | V | V.StyUK1DcmP (100% identity) | V.Sen870DcmP | |
| 27420 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen870DcmP |
| 27430 | protein yedJ | |||
| 41290 | DNA-binding protein for site-specific | |||
| 41300 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen870III |
| 41310 | protein yhdU | |||
| 42240 | Ribulose-phosphate 3-epimerase | |||
| 42250 | M | M.StyTDamP (100% identity) | GATC | M.Sen870DamP |
| 42260 | Protein damX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11000 | Major facilitator superfamily (MFS_1) | |||
| 11010 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen870I |
| 11020 | R | StyUK1IP (100% identity) | CAGAG | Sen870IP |
| 11030 | 44 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6570 | Type I restriction enzyme EcoKI R protein | |||
| 6580 | R | Sen798MrrP (100% identity) | Sen870MrrP | |
| 6590 | 95 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 34370 | replication endonuclease from prophage-like | |||
| 34380 | M | M.Sens24219ORF5575P (100% identity) | GATC | M.Sen870ORF34380P |
| 34390 | Exonuclease | |||