Leptolyngbya species PCC 6406 |
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Putative Leptolyngbya species PCC 6406 RM systems
Ref: Shih,P.M. et al. Proc. Natl. Acad. Sci. U.S.A. 110 (3), 1053-1058 (2013)
REBASE ref # 19276
Contig set: 5,769,257 bp
GenBank #: ALVV00000000 (NZ_ALVV00000000)
REBASE acronym: Lsp6406
Org_num: 9346
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | Gsp1H9ORFGP (54% identity) | Lsp6406ORFLP | |
| ??? | 88 aa hypothetical protein | |||
| ??? | R | Restriction endonuclease, type I, EcoRI, R subunit/Type III, partial | Lsp6406ORFNP | |
| ??? | M | M.Mvi102ORF29170P (80% identity) | M.Lsp6406ORFKP | |
| ??? | S | S.Pru82ORF3352P (40% identity) | S.Lsp6406ORFKP | |
| ??? | R | 96 aa hypothetical protein, partial | Lsp6406ORFKP | |
| ??? | M | M.AmaMORF4786P (80% identity) | CAGNNNNNNCATC | M.Lsp6406IX |
| ??? | S | S.Dph13687ORF870P (44% identity) | CAGNNNNNNCATC | S.Lsp6406IX |
| ??? | R | Nsp4103ORF65920P (71% identity) | CAGNNNNNNCATC | Lsp6406IXP |
| ??? | M | M.Csp7425ORF3148P (80% identity) | TCCANNNNNCTC | M.Lsp6406XI |
| ??? | S | S.MspKolORF2793P (35% identity) | TCCANNNNNCTC | S.Lsp6406XI |
| ??? | R | Csp7425ORF3148P (70% identity) | TCCANNNNNCTC | Lsp6406XIP |
| ??? | M | M.AmaS15ORF15375P (83% identity) | M.Lsp6406ORFNP | |
| ??? | S | S.SalG1ORF13600P (52% identity) | S.Lsp6406ORFNP | |
| ??? | R | PcrKORF952P (58% identity) | GGAGNNNNNCTC | Lsp6406VIIP |
| ??? | S | S.Dma170I (40% identity) | GGAGNNNNNCTC | S.Lsp6406VII |
| ??? | M | M.AplPORF4980P (72% identity) | GGAGNNNNNCTC | M.Lsp6406VII |
| ??? | S | S.NcyWK1ORF3670P (17% identity) | GACNNNNNNCTGG | S.Lsp6406X |
| ??? | M | M.Pte9214ORF628P (73% identity) | GACNNNNNNCTGG | M.Lsp6406X |
| ??? | S | S.CspB1200ORF8120P (30% identity) | CAAYNNNNNNNNTTGG | S.Lsp6406VIII |
| ??? | M | M.DmuORFBP (82% identity) | CAAYNNNNNNNNTTGG | M.Lsp6406VIII |
| ??? | R | VchSA3GORF11990P (81% identity) | CAAYNNNNNNNNTTGG | Lsp6406VIIIP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Csp3974ORF46420P (69% identity) | TTCGAA | M.Lsp6406I |
| ??? | R | LspO77ORF2337P (87% identity) | TTCGAA | Lsp6406IP |
| ??? | M | M.Csp7425ORF4269P (57% identity) | CCCGGG | M.Lsp6406ORFRP |
| ??? | R | SspFG7ORF19940P (41% identity) | CCCGGG | Lsp6406ORFRP |
| ??? | M | M.Lco141951ORF18395P (62% identity) | CGATCG | M.Lsp6406ORFA1P |
| ??? | RM | 619 aa hypothetical protein | Lsp6406ORFYP | |
| ??? | M | M.Cha6BLORF50P (81% identity) | RGGWCCY | M.Lsp6406ORFCP |
| ??? | R | Cha6BLORF40P (59% identity) | RGGWCCY | Lsp6406ORFCAP |
| ??? | R | Cha6BLORF40P (26% identity) | RGGWCCY | Lsp6406ORFCBP |
| ??? | 5-methylcytosine restriction system component-like protein | |||
| ??? | RM | Nsp7524ORF4960P (52% identity) | CRAGCAC | Lsp6406VI |
| ??? | M | M.Cbr22ORF11900P (75% identity) | GACGTC | M.Lsp6406III |
| ??? | R | Cbr22ORF11900P (67% identity) | GACGTC | Lsp6406IIIP |
| ??? | RM | PprC007ORFABP (65% identity) | Lsp6406ORFOCP | |
| ??? | RM | 133 aa hypothetical protein | Lsp6406ORFOBP | |
| ??? | RM | Lro951ORF1205P (38% identity) | Lsp6406ORFOAP | |
| ??? | RM | Nsp9414ORF5799P (55% identity) | Lsp6406ORFIBP | |
| ??? | RM | Lro951ORF32110AP (70% identity) | Lsp6406ORFIAP | |
| ??? | R | Mmo48659ORF380P (79% identity) | CTGCAG | Lsp6406IIP |
| ??? | M | M.Mme286ORFX1P (67% identity) | CTGCAG | M.Lsp6406II |
| ??? | R | Asp43ORFPP (50% identity) | ACNNNNNCTCC | Lsp6406ORFTP |
| ??? | M | M.Asp43ORFPP (28% identity) | ACNNNNNCTCC | M.Lsp6406ORFTBP |
| ??? | M | M.LmaSIT8ORFBP (62% identity) | ACNNNNNCTCC | M.Lsp6406ORFTAP |
| ??? | M | M.KspCCNU1ORF31255P (89% identity) | GGCGCC | M.Lsp6406ORFWP |
| ??? | R | KspCCNU1ORF31255P (72% identity) | GGCGCC | Lsp6406ORFWP |
| ??? | RM | CspESFC1ORFBP (53% identity) | Lsp6406ORFJP | |
| ??? | M | M.Lco141951ORF21835P (62% identity) | GATC | M.Lsp6406IV |
| ??? | R | Mva003ORF7090P (64% identity) | Lsp6406ORFUP | |
| ??? | R | LboCZ1ORF5910P (64% identity) | Lsp6406ORFB1P | |
| ??? | DNA methylase, partial | |||
| ??? | 1095 aa hypothetical protein | |||
| ??? | M | M.LspKIOST1ORFHP (63% identity) | M.Lsp6406ORFBP | |
| ??? | M | M.HhoC2206ORF36310P (66% identity) | TTTAAA | M.Lsp6406V |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | 106 aa hypothetical protein | |||
| ??? | R | Sto61278McrCP (49% identity) | Lsp6406McrCP | |
| ??? | R | Psp001McrBP (22% identity) | Lsp6406McrBP | |
| ??? | R | AspMBMcrBP (71% identity) | Lsp6406McrB2P | |
| ??? | R | AspMBMcrCP (69% identity) | Lsp6406McrC2P | |