Helicobacter pylori 1786/05 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 1786/05 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,619,653 bp
GenBank #: JSXW00000000 (NZ_JSXW00000000)
REBASE acronym: Hpy1786
Org_num: 15057
All begin HPY1786_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 275 | S | restriction endonuclease subunit S | S.Hpy1786ORF275P | |
| 280 | R | HpySW27ORF4070P (95% identity) | Hpy1786ORF275P | |
| 285 | hydroxyethylthiazole kinase | |||
| 6680 | R | HpyF001ORF2290P (75% identity) | Hpy1786ORF6685P | |
| 6685 | M | M.Hpy5033ORF1830P (97% identity) | M.Hpy1786ORF6685P | |
| 6690 | S | S.HpyPR05ORF2175P (97% identity) | S.Hpy1786ORF6685P | |
| 390 | membrane protein | |||
| 395 | M | M.HpySP316X (93% identity) | M.Hpy1786ORF395P | |
| 400 | S | restriction endonuclease subunit S | S.Hpy1786ORF395P | |
| 4960 | FAD-dependent thymidylate synthase | |||
| 4965 | S | S.HpySWT11X (97% identity) | S.Hpy1786ORF4970P | |
| 4970 | M | M.HpyU427II (96% identity) | M.Hpy1786ORF4970P | |
| 4975 | R | HpyPO106IVP (95% identity) | Hpy1786ORF4970P | |
| 4980 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2880 | alpha-1,2-fucosyltransferase | |||
| 2885 | M | M.HpyH005VIII (97% identity) | GATC | M.Hpy1786ORF2885P |
| 2890 | R | HpySP404IXP (99% identity) | GATC | Hpy1786ORF2885P |
| 2900 | malonyl CoA-ACP transacylase | |||
| 3535 | 144 aa hypothetical protein | |||
| 3540 | M | M.HpySP324XIII (96% identity) | GCGC | M.Hpy1786ORF3540P |
| 3545 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 3105 | 718 aa hypothetical protein | |||
| 3110 | RM | HpyF020XIX (87% identity) | Hpy1786ORF3110P | |
| 3115 | pseudogene | |||
| 4380 | 94 aa hypothetical protein | |||
| 4385 | M | M.HpyU201I (99% identity) | CATG | M.Hpy1786ORF4385P |
| 4390 | hydrolase | |||
| 5760 | acetyl-CoA carboxylase | |||
| 5765 | M | M.HpyPO03XI (99% identity) | TCNNGA | M.Hpy1786ORF5765P |
| 5770 | R | HpyU411XIVP (99% identity) | TCNNGA | Hpy1786ORF5765P |
| 5775 | Laminin subunit alpha-2 precursor | |||
| 2405 | flagellar hook protein FlgE | |||
| 2410 | R | HpySWT13IXP (88% identity) | GTNNAC | Hpy1786ORF2415P |
| 2415 | M | M.HpyBGR10ORF4235P (98% identity) | GTNNAC | M.Hpy1786ORF2415P |
| 2420 | ATP-dependent DNA helicase | |||
| 7885 | pseudogene | |||
| 7890 | M | M.HpyPOR112ORF2215P (97% identity) | ACGT | M.Hpy1786ORF7890P |
| 7895 | GTP-binding protein | |||
| 720 | chemotaxis protein CheY | |||
| 725 | C | C2.HpyPO03ORF2045P (98% identity) | C.Hpy1786ORF735P | |
| 730 | R | HpyPO01ORF2070P (100% identity) | GTCTC | Hpy1786ORF735P |
| ??? | M | M2.HpyPO03ORF2045P (83% identity) | GTCTC | M1.Hpy1786ORF735P |
| 745 | M | M1.HpyU005IV (100% identity) | GTCTC | M2.Hpy1786ORF735P |
| 750 | pseudogene | |||
| 7900 | glycosyltransferase 9 family protein | |||
| 7905 | M | M.HpyLI06III (96% identity) | ATTAAT | M.Hpy1786ORF7905P |
| 7910 | membrane protein | |||
| 4580 | DNA gyrase subunit B | |||
| ??? | M | M.HpyU207IX (99% identity) | GTAC | M.Hpy1786ORF4585P |
| 4595 | R | HpyGT04IXP (96% identity) | GTAC | Hpy1786ORF4585P |
| 4600 | membrane protein | |||
| 6895 | glycerol-3-phosphate dehydrogenase | |||
| 6900 | RM | HpyCOL6ORF3195P (90% identity) | Hpy1786ORF6900P | |
| 6905 | 353 aa hypothetical protein | |||
| 6795 | agmatine deiminase | |||
| 6800 | M | M1.HpyCOL105IV (98% identity) | CCTC | M1.Hpy1786ORF6800P |
| 6805 | M | M2.HpyU208VP (98% identity) | CCTC | M2.Hpy1786ORF6800P |
| 6810 | proline:sodium symporter PutP | |||
| 4850 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpySP107ORF6775P (98% identity) | GAATTC | Hpy1786ORF4860P |
| 4860 | M | M.HpySWT01VII (99% identity) | GAATTC | M.Hpy1786ORF4860P |
| 4865 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 5055 | 67 aa hypothetical protein | |||
| 5060 | M | M.HpyOK317ORFMP (100% identity) | TGCA | M.Hpy1786ORF5060P |
| 5065 | R | HpySP319XIIP (98% identity) | TGCA | Hpy1786ORF5060P |
| 5070 | cytochrome C | |||
| 3340 | amidophosphoribosyltransferase | |||
| 3345 | RM | HpyDO8ORF7015P (98% identity) | Hpy1786ORF3345P | |
| 3350 | S | S.HpyI025ORF7060P (95% identity) | S.Hpy1786ORF3345P | |
| 3355 | DNA polymerase I | |||
| 1115 | 92 aa hypothetical protein, partial | |||
| 1120 | M | M.HpyU408ORF1720P (100% identity) | GCNGC | M.Hpy1786ORF1120P |
| 1125 | GTP-binding protein LepA | |||
| 6485 | glycosyltransferase 9 family protein | |||
| ??? | R | HpyNCI39ORFZP (97% identity) | GANTC | Hpy1786ORF6505P |
| 6500 | 60 aa hypothetical protein | |||
| 6505 | M | M.HpyGE3ORF6380P (40% identity) | GANTC | M.Hpy1786ORF6505P |
| ??? | hypothetical protein | |||
| 6505 | DNA methyltransferase | |||
| ??? | RM | HpySP705ORF470P (83% identity) | Hpy1786ORF6510P | |
| 6520 | nicotinate-nucleotide pyrophosphorylase | |||
| 6570 | chemotaxis protein CheY | |||
| 6575 | R | HpyAL7VIP (99% identity) | GAAGA | Hpy1786ORF6580P |
| 6580 | M | M1.HpyPO12VII (100% identity) | GAAGA | M1.Hpy1786ORF6580P |
| 6585 | M | M2.HpyIS1V (99% identity) | GAAGA | M2.Hpy1786ORF6580P |
| 6590 | DNA methylase | |||
| 7475 | membrane protein | |||
| 7480 | R | HpySP703ORF2760P (99% identity) | GCSGC | Hpy1786ORF7485P |
| ??? | M | M.HpyKH7ORFQP (98% identity) | GCSGC | M.Hpy1786ORF7485P |
| 7490 | cadmium transporter | |||
| 1530 | chaperone protein ClpB | |||
| 1535 | M | M.HpySP107III (100% identity) | CCGG | M.Hpy1786ORF1535P |
| ??? | R | HpyGE20ORF1295P (86% identity) | CCGG | Hpy1786ORF1535P |
| 1550 | pseudogene | |||
| 1550 | pseudogene | |||
| 1555 | M | M.HpyLI13XI (98% identity) | TCGA | M.Hpy1786ORF1555P |
| 1560 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3085 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyG020ORF6875P (96% identity) | M.Hpy1786ORF3090P | |
| 3100 | R | HpyCOL310ORF7235P (95% identity) | Hpy1786ORF3090P | |
| 3105 | 718 aa hypothetical protein | |||
| 2565 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 2570 | R | Hpy7CORF3725P (95% identity) | Hpy1786ORF2575P | |
| 2575 | M | M.HpyBR3ORF3635P (97% identity) | M.Hpy1786ORF2575P | |
| 2580 | 54 aa hypothetical protein | |||
| 6585 | restriction endonuclease subunit M | |||
| 6590 | M | M.HpySP318ORF6830P (95% identity) | M.Hpy1786ORF6590P | |
| ??? | R | HpyBR8ORF6645P (97% identity) | Hpy1786ORF6590P | |
| 6605 | rod shape-determining protein MreC | |||
| 6655 | endonuclease | |||
| 6660 | M | M.Hpy015ORF6725P (97% identity) | M.Hpy1786ORF6660P | |
| 6665 | R | HpyGRE044ORF6775P (89% identity) | Hpy1786ORF6660P | |
| 6670 | biotin synthase | |||