Helicobacter pylori 655/99 |
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Putative Helicobacter pylori 655/99 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,615,595 bp
GenBank #: JSXB00000000 (NZ_JSXB00000000)
REBASE acronym: Hpy655
Org_num: 15052
All begin HPY655_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6955 | S | S.HpyF016ORF2145P (98% identity) | S.Hpy655ORF6960P | |
| 6960 | M | M.HpySP210III (95% identity) | M.Hpy655ORF6960P | |
| 6965 | R | HpyH027XIIP (92% identity) | Hpy655ORF6960P | |
| 6970 | 631 aa hypothetical protein | |||
| 5740 | membrane protein | |||
| 5745 | M | M.HpyCOL105ORF2610P (96% identity) | M.Hpy655ORF5745P | |
| 5750 | S | S.HpyUSU101ORF4465P (94% identity) | S.Hpy655ORF5745P | |
| 5755 | R | Hpy207ORF4155P (95% identity) | Hpy655ORF5745P | |
| 5760 | hydroxyethylthiazole kinase | |||
| 5960 | cadmium transporter | |||
| 5965 | S | S.Hpyfe93ORF7685P (96% identity) | S.Hpy655ORF5965P | |
| 2375 | metal-dependent hydrolase | |||
| 2380 | R | HpyU418VP (95% identity) | Hpy655ORF2385P | |
| 2385 | M | M.HpyC014XIV (96% identity) | M.Hpy655ORF2385P | |
| 2390 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4040 | membrane protein | |||
| 4045 | M | M.HpyME09IV (97% identity) | ATTAAT | M.Hpy655ORF4045P |
| 4050 | glycosyltransferase 9 family protein | |||
| 7075 | RM | 293 aa hypothetical protein | GGWCNA | Hpy655ORF7075P |
| 2735 | alpha-1,2-fucosyltransferase | |||
| 2740 | M | M.HpyL019II (97% identity) | GATC | M.Hpy655ORF2740P |
| 2745 | pseudogene | |||
| 6380 | M | M.HpyKH27ORFXP (93% identity) | GANTC | M.Hpy655ORF6380P |
| 6385 | R | HpyKH21ORFA1P (61% identity) | GANTC | Hpy655ORF6380P |
| 6390 | pseudogene | |||
| 1660 | membrane protein | |||
| 1665 | R | HpyME23ORF3930P (98% identity) | GTAC | Hpy655ORF1670P |
| 1670 | M | M.HpyU207IX (100% identity) | GTAC | M.Hpy655ORF1670P |
| 1675 | DNA gyrase subunit B | |||
| 4055 | GTP-binding protein | |||
| 4060 | M | M.HpySP303ORF2240P (96% identity) | ACGT | M.Hpy655ORF4060P |
| 4065 | catalase | |||
| 3070 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 3075 | M | M.HpyR08ORF6675P (95% identity) | GAATTC | M.Hpy655ORF3075P |
| 3080 | R | HpyI002ORF6735P (87% identity) | GAATTC | Hpy655ORF3075P |
| 3085 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1755 | pseudogene | |||
| 1760 | M | M2.HpySP802VP (43% identity) | CCTC | M2.Hpy655ORF1760P |
| 1765 | M | M1.HpyAR5IV (97% identity) | CCTC | M1.Hpy655ORF1760P |
| 1770 | agmatine deiminase | |||
| 6410 | pseudogene | |||
| ??? | RM | DNA methyltransferase | Hpy655ORFAP | |
| 6420 | peptidase S41 | |||
| 6640 | restriction endonuclease | |||
| 6645 | M | M.HpyKH16ORFB1P (100% identity) | M.Hpy655ORF6645P | |
| 6650 | 2, 3-cyclic nucleotide 2-phosphodiesterase | |||
| 7595 | acetyl-CoA carboxylase | |||
| 7600 | M | M.HpySP319XI (98% identity) | TCNNGA | M.Hpy655ORF7600P |
| 7605 | R | HpyU201XIIP (99% identity) | TCNNGA | Hpy655ORF7600P |
| 7610 | Laminin subunit alpha-2 precursor | |||
| 7830 | flagellar hook protein FlgE | |||
| 7835 | R | HpyCOL209XP (97% identity) | GTNNAC | Hpy655ORF7840P |
| 7840 | M | M.HpyCRI6XII (97% identity) | GTNNAC | M.Hpy655ORF7840P |
| 7845 | ATP-dependent DNA helicase | |||
| 335 | chemotaxis protein CheY | |||
| 340 | C | C2.HpyU005IVP (98% identity) | C.Hpy655ORF350P | |
| 345 | R | HpyU005IVP (96% identity) | GTCTC | Hpy655ORF350P |
| 350 | M | M2.HpyU005IV (85% identity) | GTCTC | M1.Hpy655ORF350P |
| 355 | M | M1.HpyU005IV (100% identity) | GTCTC | M2.Hpy655ORF350P |
| 360 | pseudogene | |||
| 6040 | 319 aa hypothetical protein | |||
| 6045 | RM | HpyP005ORF3490P (88% identity) | Hpy655ORF6045P | |
| 6050 | glycerol-3-phosphate dehydrogenase | |||
| 6565 | 3'-5' exonuclease | |||
| 6570 | R | HpySWT12ORF3110P (96% identity) | CCNNGG | Hpy655ORF6575P |
| ??? | M | M.Hpy18ORF3360P (98% identity) | CCNNGG | M.Hpy655ORF6575P |
| 6585 | 3-5 exonuclease | |||
| 1010 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1015 | M | M.HpyPO18XVI (96% identity) | GCGC | M.Hpy655ORF1015P |
| 1020 | 144 aa hypothetical protein | |||
| 6300 | adenine methyltransferase | |||
| 6305 | M | M2.HpyPO102V (100% identity) | GAAGA | M1.Hpy655ORF6305P |
| 6310 | M | M1.HpyU201VII (98% identity) | GAAGA | M2.Hpy655ORF6305P |
| 6315 | R | HpyPO11VIP (94% identity) | GAAGA | Hpy655ORF6305P |
| 6320 | chemotaxis protein CheY | |||
| 7250 | 94 aa hypothetical protein | |||
| 7255 | M | M.HpyB140ORF1340P (98% identity) | CATG | M.Hpy655ORF7255P |
| 7260 | hydrolase | |||
| 6370 | nicotinate-nucleotide pyrophosphorylase | |||
| 6375 | RM | HpySP17ORF455P (65% identity) | Hpy655ORF6375P | |
| 4665 | chaperone protein ClpB | |||
| 4670 | M | M.HpyR3cORF6220P (99% identity) | CCGG | M.Hpy655ORF4670P |
| 4675 | R | HpyDO8IVP (96% identity) | CCGG | Hpy655ORF4670P |
| 4680 | 204 aa hypothetical protein | |||
| 4680 | 204 aa hypothetical protein | |||
| 4685 | M | M.HpyI008XIV (98% identity) | TCGA | M.Hpy655ORF4685P |
| 4690 | exodeoxyribonuclease VII large subunit | |||
| 2285 | cytochrome C | |||
| 2290 | R | HpyU203XIIIP (99% identity) | TGCA | Hpy655ORF2295P |
| 2295 | M | M.HpySWT15XII (99% identity) | TGCA | M.Hpy655ORF2295P |
| 2300 | 67 aa hypothetical protein | |||
| 2465 | DEAD/DEAH box helicase | |||
| 2470 | RM | HpyCOL310XII (91% identity) | Hpy655ORF2470P | |
| 2475 | pseudogene | |||
| 2695 | amidophosphoribosyltransferase | |||
| 2700 | RM | HpyPORF1450P (95% identity) | Hpy655ORF2700P | |
| 2705 | S | S1.HpyGM8ORF7190P (96% identity) | S1.Hpy655ORF2700P | |
| 2710 | S | S2.HpyPO10ORF6970P (81% identity) | S2.Hpy655ORF2700P | |
| 2715 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6225 | biotin synthase | |||
| 6230 | R | HpyL017ORF6910P (89% identity) | Hpy655ORF6235P | |
| 6235 | M | M.HpySP314ORF6870P (95% identity) | M.Hpy655ORF6235P | |
| 6240 | endonuclease | |||
| 6290 | rod shape-determining protein MreC | |||
| 6295 | R | HpyU427ORF7650P (89% identity) | Hpy655ORF6300P | |
| 6300 | M | M.HpySP13ORF6565P (66% identity) | M.Hpy655ORF6300P | |
| 6305 | restriction endonuclease subunit M | |||
| 3800 | 54 aa hypothetical protein | |||
| 3805 | M | M.Hpy228ORF6000P (97% identity) | M.Hpy655ORF3805P | |
| 3810 | R | Hpy228ORF6000P (96% identity) | Hpy655ORF3805P | |
| 3815 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 2450 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpySP319ORF7765P (97% identity) | M.Hpy655ORF2455P | |
| 2465 | R | HpyG8GORFCP (93% identity) | Hpy655ORF2455P | |
| 2470 | restriction endonuclease | |||