Helicobacter pylori 228/99 |
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Putative Helicobacter pylori 228/99 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,619,591 bp
GenBank #: JSXY00000000 (NZ_JSXY00000000)
REBASE acronym: Hpy228
Org_num: 15059
All begin HPY228_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | type I restriction enzyme R protein | Hpy228ORF7245P | |
| 6345 | R | HpyI023ORF7565P (61% identity) | Hpy228ORF6345P | |
| 6350 | metal-dependent hydrolase | |||
| 2410 | R | HpyIceORFHP (32% identity) | Hpy228ORF2415P | |
| 2415 | M | M.HpySP503ORF7300P (73% identity) | M.Hpy228ORF2415P | |
| 2420 | CAAX protease | |||
| 2425 | S | S.HpySP707ORF7755P (91% identity) | S.Hpy228ORF2415P | |
| 2430 | FAD-dependent thymidylate synthase | |||
| 5225 | membrane protein | |||
| 5230 | M | M.HpySP205XIV (96% identity) | M.Hpy228ORF5230P | |
| 5235 | S | S.HpyTW23ORF4135P (98% identity) | S.Hpy228ORF5230P | |
| 5240 | R | HpyAL10XIIIP (95% identity) | Hpy228ORF5230P | |
| 5245 | hydroxyethylthiazole kinase | |||
| 385 | 69 aa hypothetical protein | |||
| 390 | S | S.HpySP209ORF3235P (95% identity) | S.Hpy228ORF390P | |
| 395 | cadmium transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10 | alpha-1,2-fucosyltransferase | |||
| 15 | M | M.Hpy397ORF1900P (97% identity) | GATC | M.Hpy228ORF15P |
| 20 | membrane protein | |||
| 6155 | peptidase S41 | |||
| 6160 | R | HpyPO102ORF6590P (97% identity) | GANTC | Hpy228ORF6165P |
| 6165 | M | M.HpyPOR110VI (99% identity) | GANTC | M.Hpy228ORF6165P |
| 6170 | DNA methyltransferase | |||
| 7275 | 144 aa hypothetical protein | |||
| 7280 | M | M.HpySP502XII (97% identity) | GCGC | M.Hpy228ORF7280P |
| 7285 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4910 | acetyl-CoA carboxylase | |||
| 4915 | M | M.HpyU207XI (99% identity) | TCNNGA | M.Hpy228ORF4915P |
| 4920 | R | HpyAR4XP (98% identity) | TCNNGA | Hpy228ORF4915P |
| 4925 | Laminin subunit alpha-2 precursor | |||
| 4155 | DNA gyrase subunit B | |||
| 4160 | M | M.HpyC123VI (99% identity) | GTAC | M.Hpy228ORF4160P |
| 4165 | R | HpyR10IXP (97% identity) | GTAC | Hpy228ORF4160P |
| 4170 | membrane protein | |||
| 6190 | glycosyltransferase 9 family protein | |||
| 6195 | RM | HpyLIM6ORF6985P (88% identity) | Hpy228ORF6195P | |
| 6200 | nicotinate-nucleotide pyrophosphorylase | |||
| 910 | membrane protein | |||
| 915 | M | M.HpyDO2II (97% identity) | ATTAAT | M.Hpy228ORF915P |
| 920 | glycosyltransferase 9 family protein | |||
| 4710 | glycerol-3-phosphate dehydrogenase | |||
| 4715 | RM | HpyBS21ORF4050P (84% identity) | Hpy228ORF4715P | |
| 4720 | membrane protein | |||
| 925 | GTP-binding protein | |||
| 930 | M | M.HpyKH29ORFB1P (98% identity) | ACNGT | M.Hpy228ORF930P |
| 935 | R | HpySP405IIP (100% identity) | ACNGT | Hpy228ORF930P |
| 940 | DNA methyltransferase | |||
| 2495 | DEAD/DEAH box helicase | |||
| 2500 | RM | HpySP04ORF7480P (89% identity) | Hpy228ORF2500P | |
| 2505 | 64 aa hypothetical protein | |||
| 6425 | 67 aa hypothetical protein | |||
| 6430 | M | M.HpySWT12II (99% identity) | TGCA | M.Hpy228ORF6430P |
| 6435 | R | HpyCOL10ORF7545P (98% identity) | TGCA | Hpy228ORF6430P |
| 6440 | cytochrome C | |||
| 935 | restriction endonuclease | |||
| 940 | M | M.HpySP110ORF2410P (97% identity) | ACGT | M.Hpy228ORF940P |
| 945 | R | HpySP20ORF3625P (99% identity) | ACGT | Hpy228ORF940P |
| 950 | 62 aa hypothetical protein | |||
| 3070 | exodeoxyribonuclease VII large subunit | |||
| 3075 | R | HpyCOL109IIIP (97% identity) | CCGG | Hpy228ORF3080P |
| 3080 | M | M.HpyPO107IV (100% identity) | CCGG | M.Hpy228ORF3080P |
| 3085 | chaperone protein ClpB | |||
| 1980 | elongation factor P | |||
| 1985 | M | M1.HpyU203ORF895P (100% identity) | M.Hpy228ORF1985P | |
| 1990 | 256 aa hypothetical protein | |||
| 1995 | R | R1.HpySP06ORF875P (96% identity) | R1.Hpy228ORF1985P | |
| 2000 | R | R2.HpyPO07ORF1065P (99% identity) | R2.Hpy228ORF1985P | |
| 2005 | N-acetylneuraminate synthase | |||
| 2585 | membrane protein | |||
| 2590 | R | HpyL022IXP (97% identity) | CCATC | Hpy228ORF2595P |
| 2595 | M | M2.HpySP304V (93% identity) | CCATC | M2.Hpy228ORF2595P |
| 2600 | M | M1.HpyISR9III (98% identity) | CCATC | M1.Hpy228ORF2595P |
| 2605 | permease | |||
| 1400 | hydrolase | |||
| 1405 | M | M.HpyKG9I (97% identity) | CATG | M.Hpy228ORF1405P |
| 1410 | 94 aa hypothetical protein | |||
| 2730 | amidophosphoribosyltransferase | |||
| 2735 | RM | HpyPR07ORF7180P (96% identity) | Hpy228ORF2735P | |
| 2740 | S | S.HpyGM4ORF6980P (94% identity) | S.Hpy228ORF2735P | |
| 2745 | DNA polymerase I | |||
| 1670 | flagellar hook protein FlgE | |||
| 1675 | R | HpyGE19VIIIP (94% identity) | GTNNAC | Hpy228ORF1680P |
| 1680 | M | M.HpyIR9IX (98% identity) | GTNNAC | M.Hpy228ORF1680P |
| 1685 | ATP-dependent DNA helicase | |||
| 6960 | agmatine deiminase | |||
| 6965 | M | M1.HpyPE136VI (98% identity) | CCTC | M1.Hpy228ORF6965P |
| 6970 | M | M2.HpyPO17VII (31% identity) | CCTC | M2.Hpy228ORF6965P |
| 6975 | proline:sodium symporter PutP | |||
| 6965 | DNA methyltransferase | |||
| ??? | M | DNA methyltransferase | CCTTC | M.Hpy228ORFAP |
| 6975 | proline:sodium symporter PutP | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2480 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpySP611ORF7495P (97% identity) | M.Hpy228ORF2485P | |
| 2495 | R | HpyCOL310ORF7235P (94% identity) | Hpy228ORF2485P | |
| 2500 | restriction endonuclease | |||
| 6255 | 322 aa hypothetical protein | |||
| 6260 | R | HpyPO02ORF6595P (94% identity) | Hpy228ORF6255P | |
| 6265 | rod shape-determining protein MreC | |||
| 5995 | 54 aa hypothetical protein | |||
| 6000 | M | M.HpyPO03XIV (98% identity) | M.Hpy228ORF6000P | |
| 6005 | R | Hpy655ORF3805P (96% identity) | Hpy228ORF6000P | |
| 6010 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 6310 | endonuclease | |||
| 6315 | M | M.Hpy135ORF7090P (95% identity) | M.Hpy228ORF6315P | |
| 6320 | R | HpyISR2ORF325P (94% identity) | Hpy228ORF6315P | |