Helicobacter pylori 173/00 |
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Putative Helicobacter pylori 173/00 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,572,960 bp
GenBank #: JSXX00000000 (NZ_JSXX00000000)
REBASE acronym: Hpy173
Org_num: 15058
All begin HPY173_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1785 | polyphosphate kinase | |||
| 1795 | S | S.HpyME09ORF2335P (95% identity) | S.Hpy173ORF1800P | |
| 1800 | M | M.HpyPR04IV (95% identity) | M.Hpy173ORF1800P | |
| 1805 | R | HpyGRE042ORF2200P (60% identity) | Hpy173ORF1800P | |
| 3270 | S | S.HpyG012ORF7190P (53% identity) | S.Hpy173ORF3275P | |
| 3275 | M | M.HpyC017XIV (96% identity) | M.Hpy173ORF3275P | |
| 3280 | R | HpyLI23ORF7535P (95% identity) | Hpy173ORF3275P | |
| 3285 | metal-dependent hydrolase | |||
| 1850 | hydroxyethylthiazole kinase | |||
| 1855 | R | HpyL033XVP (89% identity) | Hpy173ORF1865P | |
| 1860 | S | S.HpySW16ORF3445P (92% identity) | S.Hpy173ORF1865P | |
| 1865 | M | M.HpyPE16XIV (94% identity) | M.Hpy173ORF1865P | |
| 1870 | modification methylase | |||
| 6825 | cadmium transporter | |||
| 6830 | S | S.HpyG004ORF7195P (43% identity) | S.Hpy173ORF6830P | |
| 3230 | 90 aa hypothetical protein | |||
| 3235 | S | S.HpySP805ORF7190P (97% identity) | S.Hpy173ORF3235P | |
| 3240 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3295 | membrane protein | |||
| 3300 | M | M.HpySP319III (97% identity) | ATTAAT | M.Hpy173ORF3300P |
| 3305 | glycosyltransferase 9 family protein | |||
| 5930 | M | DNA adenine methylase | CCATC | M.Hpy173ORF5930P |
| 5935 | R | HpyBR3IIIP (97% identity) | CCATC | Hpy173ORF5930P |
| 5940 | membrane protein | |||
| 7580 | RM | DNA methyltransferase | Hpy173ORF7580P | |
| 7585 | DNA methyltransferase | |||
| 7715 | alpha-1,2-fucosyltransferase | |||
| 7720 | M | M.HpyU436VII (97% identity) | GATC | M.Hpy173ORF7720P |
| 7725 | R | 73 aa hypothetical protein | GATC | Hpy173ORF7720P |
| 4920 | ATPase AAA | |||
| 4925 | R | R1.HpyL006ORF5615P (99% identity) | Hpy173ORF4925P | |
| 4930 | N-acetylneuraminate synthase | |||
| 3550 | 94 aa hypothetical protein | |||
| 3555 | M | M.Hpy1786ORF4385P (98% identity) | CATG | M.Hpy173ORF3555P |
| 3560 | hydrolase | |||
| 3310 | GTP-binding protein | |||
| 3315 | M | M.HpyPO105ORF3735P (99% identity) | ACGT | M.Hpy173ORF3315P |
| 3320 | R | HpyCOL203ORF2250P (97% identity) | ACGT | Hpy173ORF3315P |
| 3325 | catalase | |||
| 2890 | proline:sodium symporter PutP | |||
| 2895 | M | M.HpySW05VII (99% identity) | CCTTC | M.Hpy173ORF2895P |
| 2900 | R | HpyPO01IXP (98% identity) | CCTTC | Hpy173ORF2895P |
| 2905 | restriction endonuclease | |||
| 7605 | pseudogene | |||
| 7610 | M | M.HpyISR4VIII (79% identity) | GANTC | M.Hpy173ORF7610P |
| ??? | R | HpyU424VIIP (91% identity) | GANTC | Hpy173ORF7610P |
| 7620 | peptidase S41 | |||
| 3145 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 3150 | M | M.HpySWT01VII (98% identity) | GAATTC | M.Hpy173ORF3150P |
| 3155 | R | HpyMM01ORF6780P (87% identity) | GAATTC | Hpy173ORF3150P |
| 3160 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 4260 | 144 aa hypothetical protein | |||
| 4265 | R | Hpyoh1ORF495P (99% identity) | GCGC | Hpy173ORF4270P |
| 4270 | M | M.HpyR11XVI (95% identity) | GCGC | M.Hpy173ORF4270P |
| 4275 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4405 | malonyl CoA-ACP transacylase | |||
| 4415 | R | restriction endonuclease MboI | GATC | Hpy173ORF4415P |
| 7325 | ATP-dependent DNA helicase | |||
| 7330 | M | M.HpyCOL106ORF3485P (97% identity) | GTNNAC | M.Hpy173ORF7330P |
| 7335 | R | HpySP15IIP (96% identity) | GTNNAC | Hpy173ORF7330P |
| 7340 | flagellar hook protein FlgE | |||
| 2900 | restriction endonuclease Hin4II | |||
| 2905 | R | HpyPO09VIIP (100% identity) | GTSAC | Hpy173ORF2910P |
| 2910 | M | M.HpyU101VIII (100% identity) | GTSAC | M.Hpy173ORF2910P |
| 2915 | restriction endonuclease | |||
| 5910 | chemotaxis protein CheY | |||
| 5915 | C | C2.HpyU005IVP (98% identity) | C.Hpy173ORF5925P | |
| 5920 | R | HpyPO01ORF2070P (100% identity) | GTCTC | Hpy173ORF5925P |
| 5925 | M | M2.HpyU005IV (73% identity) | GTCTC | M.Hpy173ORF5925P |
| 4025 | nicotinate-nucleotide pyrophosphorylase | |||
| 4030 | RM | Hpy24AORFKP (65% identity) | Hpy173ORF4030P | |
| 2910 | restriction endonuclease | |||
| 2915 | R | HpyU204VP (94% identity) | CCTC | Hpy173ORF2920P |
| 2920 | M | M2.HpyF001ORF270P (34% identity) | CCTC | M.Hpy173ORF2920P |
| 1865 | restriction endonuclease | |||
| 1870 | M | M.HpySP312ORF4340P (100% identity) | GGCC | M.Hpy173ORF1870P |
| 1875 | R | HpySP404ORF4115P (99% identity) | GGCC | Hpy173ORF1870P |
| 1880 | membrane protein | |||
| 2655 | 67 aa hypothetical protein | |||
| 2660 | M | M.HpyOki112ORF7890P (97% identity) | TGCA | M.Hpy173ORF2660P |
| 2665 | R | Hpyfe75ORF7750P (92% identity) | TGCA | Hpy173ORF2660P |
| 2670 | cytochrome C | |||
| 845 | membrane protein | |||
| 850 | RM | HpySP205ORF2955P (90% identity) | Hpy173ORF850P | |
| 855 | glycerol-3-phosphate dehydrogenase | |||
| 1590 | site-specific DNA-methyltransferase | |||
| 1595 | M | M2.HpyU204VIII (99% identity) | GAAGA | M1.Hpy173ORF1595P |
| 1600 | M | M2.HpySP301V (97% identity) | GAAGA | M2.Hpy173ORF1595P |
| 1605 | R | HpyME40IIP (84% identity) | GAAGA | Hpy173ORF1595P |
| 6015 | 30 aa hypothetical protein | |||
| 6020 | RM | HpyAL4ORF7165P (77% identity) | Hpy173ORF6020P | |
| 6030 | DEAD/DEAH box helicase | |||
| 3910 | Laminin subunit alpha-2 precursor | |||
| 3915 | R | HpyDO9XIP (96% identity) | TCNNGA | Hpy173ORF3920P |
| 3920 | M | M.HpyISR4XII (99% identity) | TCNNGA | M.Hpy173ORF3920P |
| 3925 | acetyl-CoA carboxylase | |||
| 4735 | agmatine deiminase | |||
| 4740 | M | M1.HpyAR3XVI (99% identity) | CCTC | M1.Hpy173ORF4740P |
| 4745 | M | M2.HpyF001XIIP (63% identity) | M2.Hpy173ORF4740P | |
| 150 | DNA polymerase I | |||
| 155 | S | S.HpyISR1ORF7040P (43% identity) | S2.Hpy173ORF160P | |
| 160 | S | S1.HpySP611ORF7245P (95% identity) | S1.Hpy173ORF160P | |
| 165 | RM | HpyKH2ORFNP (96% identity) | Hpy173ORF160P | |
| 170 | amidophosphoribosyltransferase | |||
| 1075 | exodeoxyribonuclease VII large subunit | |||
| ??? | R | HpySP210XIP (96% identity) | CCGG | Hpy173ORF1090P |
| 1090 | M | M.HpySW10III (98% identity) | CCGG | M.Hpy173ORF1090P |
| 1095 | chaperone protein ClpB | |||
| 2760 | 366 aa hypothetical protein | |||
| 2765 | M | M.HpySP104ORF7575P (100% identity) | M.Hpy173ORF2765P | |
| 2770 | cell division protein FstI | |||
| 5205 | elongation factor P | |||
| 5210 | M | M1.HpyGE9ORF1105P (98% identity) | M.Hpy173ORF5210P | |
| 5215 | 215 aa hypothetical protein | |||
| 295 | permease | |||
| 300 | M | M2.HpyKH8ORFNP (99% identity) | CCATC | M.Hpy173ORF300P |
| 1325 | polysaccharide deacetylase | |||
| 1330 | R | HpyPR08VIIP (100% identity) | CTNAG | Hpy173ORF1335P |
| 1335 | M | M.HpyPR08VII (100% identity) | CTNAG | M.Hpy173ORF1335P |
| 1340 | 120 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1520 | R | HpyPO108ORF325P (89% identity) | Hpy173ORF1525P | |
| 1525 | M | M.HpyP010ORF325P (96% identity) | M.Hpy173ORF1525P | |
| 1530 | endonuclease | |||
| 1580 | rod shape-determining protein MreC | |||
| 1585 | R | HpyPO01ORF6400P (94% identity) | Hpy173ORF1590P | |
| 1590 | M | M.HpyP110ORF6475P (95% identity) | M.Hpy173ORF1590P | |
| 1595 | restriction endonuclease subunit M | |||
| 6020 | restriction endonuclease | |||
| 6030 | R | HpyU002ORF7495P (94% identity) | Hpy173ORF6035P | |
| 6035 | M | M.HpySP209ORF7345P (96% identity) | M.Hpy173ORF6035P | |
| 6040 | ATP-dependent DNA helicase RecG | |||
| 5445 | 54 aa hypothetical protein | |||
| 5450 | M | M.Hpy1786ORF2575P (94% identity) | M.Hpy173ORF5450P | |
| 5455 | R | HpyC1119ORFNP (96% identity) | Hpy173ORF5450P | |
| 5460 | 2-oxoglutarate:acceptor oxidoreductase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4920 | R | R1.HpySW04ORF860P (97% identity) | Hpy173McrBP | |
| 4925 | llaJI restriction endonuclease | |||