Helicobacter pylori 1846/05 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 1846/05 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,641,829 bp
GenBank #: JSXV00000000 (NZ_JSXV00000000)
REBASE acronym: Hpy1846
Org_num: 15055
All begin HPY1846_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5165 | formyltetrahydrofolate deformylase | |||
| 5170 | S | S.HpyCOL119XV (60% identity) | S.Hpy1846ORF5170P | |
| 85 | 631 aa hypothetical protein | |||
| 90 | R | HpyPE104ORF2470P (92% identity) | Hpy1846ORF95P | |
| 95 | M | M.HpyPO106ORF2155P (97% identity) | M.Hpy1846ORF95P | |
| 100 | S | S.HpyC209ORF2350P (98% identity) | S.Hpy1846ORF95P | |
| 2610 | cadmium transporter | |||
| 2615 | S | type I restriction modification protein | S1.Hpy1846ORF2625P | |
| 2625 | M | M.HpySW21XIII (95% identity) | M.Hpy1846ORF2625P | |
| 2630 | S | S.HpyLI24ORF2565P (96% identity) | S2.Hpy1846ORF2625P | |
| 2635 | R | HpyPE14XP (96% identity) | Hpy1846ORF2625P | |
| 2640 | hydroxyethylthiazole kinase | |||
| 7560 | membrane protein | |||
| 7565 | S | S.HpyPE116ORF4210P (48% identity) | S.Hpy1846ORF7565P | |
| 935 | FAD-dependent thymidylate synthase | |||
| 940 | S | S.HpyKH1ORFEP (97% identity) | S.Hpy1846ORF950P | |
| 945 | pseudogene | |||
| 950 | M | M.HpyPOR110XIV (95% identity) | M.Hpy1846ORF950P | |
| 955 | R | HpyF006XVP (96% identity) | Hpy1846ORF950P | |
| 960 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 105 | membrane protein | |||
| 110 | M | M.HpyT001III (86% identity) | ATTAAT | M.Hpy1846ORF110P |
| 2985 | 168 aa hypothetical protein | |||
| 2990 | M | M.HpyPE130IX (99% identity) | TCGA | M.Hpy1846ORF2990P |
| 2995 | exodeoxyribonuclease VII large subunit | |||
| 3630 | R | HpyME44ORF1305P (90% identity) | CCGG | Hpy1846ORF3635P |
| 3635 | M | M.HpyU420III (100% identity) | CCGG | M.Hpy1846ORF3635P |
| 3640 | chaperone protein ClpB | |||
| 4595 | GTP-binding protein | |||
| 4600 | M | M.HpySP01IV (99% identity) | ACNGT | M.Hpy1846ORF4600P |
| 4605 | R | HpyPE117IIP (98% identity) | ACNGT | Hpy1846ORF4600P |
| 4610 | DNA methyltransferase | |||
| 4505 | membrane protein | |||
| 4510 | R | HpyH014XP (96% identity) | GTAC | Hpy1846ORF4515P |
| 4515 | M | M.Hpy328ORF5970P (96% identity) | GTAC | M.Hpy1846ORF4515P |
| 4520 | DNA gyrase subunit B | |||
| 4605 | restriction endonuclease | |||
| 4610 | M | M.HpyC014ORF2500P (99% identity) | ACGT | M.Hpy1846ORF4610P |
| 4615 | R | HpyNCI28ORFTP (100% identity) | ACGT | Hpy1846ORF4610P |
| 4620 | catalase | |||
| 4365 | 144 aa hypothetical protein | |||
| 4370 | M | M.HpyG012XVII (96% identity) | GCGC | M.Hpy1846ORF4370P |
| 4375 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5110 | malonyl CoA-ACP transacylase | |||
| 5120 | R | HpyCOL118IXP (100% identity) | GATC | Hpy1846ORF5125P |
| 5125 | M | M.HpyCOL118IX (96% identity) | GATC | M.Hpy1846ORF5125P |
| 5130 | alpha-1,2-fucosyltransferase | |||
| 3530 | flagellar hook protein FlgE | |||
| 3535 | R | HpySP10XIIIP (96% identity) | GTNNAC | Hpy1846ORF3540P |
| 3540 | M | M.HpyME24XII (96% identity) | GTNNAC | M.Hpy1846ORF3540P |
| 3545 | ATP-dependent DNA helicase | |||
| 2425 | nicotinate-nucleotide pyrophosphorylase | |||
| 2430 | RM | HpyMM10ORF6330P (85% identity) | Hpy1846ORF2430P | |
| 2435 | DNA methyltransferase | |||
| 2430 | pseudogene | |||
| 2435 | M | M.HpyCOL318V (98% identity) | GANTC | M.Hpy1846ORF2435P |
| 2440 | R | HpyPE110IXP (95% identity) | GANTC | Hpy1846ORF2435P |
| 2445 | peptidase S41 | |||
| 2310 | Laminin subunit alpha-2 precursor | |||
| 2315 | R | HpySP17XIIIP (100% identity) | TCNNGA | Hpy1846ORF2320P |
| 2320 | M | M.HpyPE116XI (99% identity) | TCNNGA | M.Hpy1846ORF2320P |
| 2325 | acetyl-CoA carboxylase | |||
| 625 | DNA polymerase I | |||
| 630 | S | S.HpyIR2ORF6800P (96% identity) | S.Hpy1846ORF635P | |
| 635 | RM | HpyNCI28ORFIP (97% identity) | Hpy1846ORF635P | |
| 640 | amidophosphoribosyltransferase | |||
| 6870 | serine acetyltransferase | |||
| 6875 | R | HpySP13IP (99% identity) | CATG | Hpy1846ORF6880P |
| 6880 | M | M.Hpyoh1ORF955P (98% identity) | CATG | M.Hpy1846ORF6880P |
| 6885 | hydrolase | |||
| 5435 | proline:sodium symporter PutP | |||
| 5440 | M | M.Hpy17874ORF576P (98% identity) | CCTTC | M.Hpy1846ORF5440P |
| 5445 | R | HpyC22IIIP (97% identity) | CCTTC | Hpy1846ORF5440P |
| 5450 | DNA methyltransferase | |||
| 5445 | restriction endonuclease Hin4II | |||
| 5450 | M | M2.HpySP304VIIP (97% identity) | CCTC | M2.Hpy1846ORF5450P |
| 5455 | M | M1.HpyAR5IV (99% identity) | CCTC | M1.Hpy1846ORF5450P |
| 5460 | agmatine deiminase | |||
| 2130 | glycosyltransferase 9 family protein | |||
| 2135 | M | M.HpyH016XII (99% identity) | GATATC | M.Hpy1846ORF2135P |
| 2140 | R | HpyH016XIIP (97% identity) | GATATC | Hpy1846ORF2135P |
| 2145 | glycosyltransferase 9 family protein | |||
| 4275 | membrane protein | |||
| ??? | RM | HpyPO08ORF3435P (45% identity) | Hpy1846ORF4280BP | |
| 4285 | RM | helicase | Hpy1846ORF4280AP | |
| 4290 | glycerol-3-phosphate dehydrogenase | |||
| 3870 | polysaccharide deacetylase | |||
| 3875 | R | HpyME40VIP (100% identity) | CTNAG | Hpy1846ORF3880P |
| 3880 | M | M.HpySWT13II (99% identity) | CTNAG | M.Hpy1846ORF3880P |
| 3885 | 125 aa hypothetical protein | |||
| 850 | CAAX protease | |||
| 855 | RM | HpyCOL208XVIII (70% identity) | Hpy1846ORF855P | |
| 865 | DEAD/DEAH box helicase | |||
| 5965 | cytochrome C | |||
| 5970 | R | HpyU008XIP (99% identity) | TGCA | Hpy1846ORF5975P |
| 5975 | M | M.HpyH025III (97% identity) | TGCA | M.Hpy1846ORF5975P |
| 5980 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2370 | M | M.HpyPE104ORF6840P (55% identity) | M.Hpy1846ORF2370P | |
| 2375 | chemotaxis protein CheY | |||
| ??? | M | M.HpyPE109ORF6560P (45% identity) | M.Hpy1846ORF3550P | |
| 3555 | R | HpyID6ORF6440P (94% identity) | Hpy1846ORF3550P | |
| 3560 | rod shape-determining protein MreC | |||
| 1360 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 1365 | R | HpySP10ORF2430P (96% identity) | Hpy1846ORF1370P | |
| 1370 | M | M.HpyPO09XIX (97% identity) | M.Hpy1846ORF1370P | |
| 1375 | 54 aa hypothetical protein | |||
| 3610 | endonuclease | |||
| 3615 | M | M.HpyU311ORF7560P (95% identity) | M.Hpy1846ORF3615P | |
| 3620 | R | HpySP02ORF6535P (90% identity) | Hpy1846ORF3615P | |
| 855 | restriction endonuclease | |||
| 865 | R | Hpy13094ORF757P (94% identity) | Hpy1846ORF870P | |
| ??? | M | M.Hpy017ORF7115P (96% identity) | M.Hpy1846ORF870P | |
| 880 | ATP-dependent DNA helicase RecG | |||