Helicobacter pylori 1089/03 |
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Putative Helicobacter pylori 1089/03 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,587,129 bp
GenBank #: JSUY00000000 (NZ_JSUY00000000)
REBASE acronym: Hpy1089
Org_num: 15046
All begin HPY1089_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4860 | metal-dependent hydrolase | |||
| 4865 | R | Hpy1198ORF1010P (100% identity) | Hpy1089ORF4870P | |
| 4870 | M | M.Hpy1198ORF1010P (100% identity) | M.Hpy1089ORF4870P | |
| 4875 | CAAX protease | |||
| 4590 | polyphosphate kinase | |||
| 4600 | S | S.Hpy1198ORF4455P (100% identity) | S.Hpy1089ORF4605P | |
| 4605 | M | M.Hpy1198ORF4455P (100% identity) | M.Hpy1089ORF4605P | |
| 4610 | R | HpySP210IIIP (92% identity) | Hpy1089ORF4605P | |
| 4615 | 631 aa hypothetical protein | |||
| 1795 | membrane protein | |||
| 1800 | M | M.Hpy1198ORF1980P (100% identity) | M.Hpy1089ORF1800P | |
| 1805 | S | S.Hpy1198ORF1980P (100% identity) | S.Hpy1089ORF1800P | |
| 1810 | R | Hpy1198ORF1980P (100% identity) | Hpy1089ORF1800P | |
| 1815 | hydroxyethylthiazole kinase | |||
| 6095 | cag pathogenicity island protein | |||
| 6100 | S | S1.Hpy1198ORF1010P (100% identity) | S.Hpy1089ORF6100P | |
| 6105 | formyltetrahydrofolate deformylase | |||
| 5690 | cadmium transporter | |||
| 5695 | S | S.Hpy1198ORF3895P (100% identity) | S.Hpy1089ORF5695P | |
| 5700 | 104 aa hypothetical protein, partial | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4725 | membrane protein | |||
| 4730 | M | M.Hpy1198ORF55P (100% identity) | ATTAAT | M.Hpy1089ORF4730P |
| 4735 | glycosyltransferase 9 family protein | |||
| 1175 | alpha-1,2-fucosyltransferase | |||
| 1180 | M | M.Hpy1198ORF1855P (100% identity) | GATC | M.Hpy1089ORF1180P |
| 1185 | membrane protein | |||
| 2505 | M | M.Hpy1198ORF6125P (100% identity) | TCGA | M.Hpy1089ORF2505P |
| 2510 | exodeoxyribonuclease VII large subunit | |||
| 3465 | 67 aa hypothetical protein | |||
| 3470 | M | M.Hpy1198ORF1105P (100% identity) | TGCA | M.Hpy1089ORF3470P |
| 3475 | R | HpyPE105XIVP (100% identity) | TGCA | Hpy1089ORF3470P |
| 3480 | cytochrome C | |||
| 5780 | ATP-dependent DNA helicase | |||
| 5785 | M | M.Hpy1198ORF4585P (100% identity) | GTNNAC | M.Hpy1089ORF5785P |
| 5790 | R | Hpy1198ORF4585P (100% identity) | GTNNAC | Hpy1089ORF5785P |
| 5795 | flagellar hook protein FlgE | |||
| 5370 | 144 aa hypothetical protein | |||
| 5375 | M | M.Hpy1198ORF5310P (100% identity) | GCGC | M.Hpy1089ORF5375P |
| 5380 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5275 | Laminin subunit alpha-2 precursor | |||
| 5280 | R | HpyC113IIP (100% identity) | TCNNGA | Hpy1089ORF5285P |
| 5285 | M | M.Hpy1198ORF4300P (100% identity) | TCNNGA | M.Hpy1089ORF5285P |
| 5290 | acetyl-CoA carboxylase | |||
| 5535 | osmoprotection protein | |||
| 5540 | M | M.Hpy380ORF1160P (100% identity) | CGWCG | M.Hpy1089ORF5540P |
| 5545 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1089ORF5540P |
| 5550 | osmoprotection binding protein | |||
| 7105 | DNA gyrase subunit B | |||
| 7110 | M | M.Hpy1198ORF7415P (100% identity) | GTAC | M.Hpy1089ORF7110P |
| 7115 | R | Hpy1198ORF7415P (100% identity) | GTAC | Hpy1089ORF7110P |
| 7120 | membrane protein | |||
| 6715 | polysaccharide deacetylase | |||
| 6720 | R | Hpy1198ORF5750P (100% identity) | CTNAG | Hpy1089ORF6725P |
| 6725 | M | M.Hpy1198ORF5750P (100% identity) | CTNAG | M.Hpy1089ORF6725P |
| 6730 | 125 aa hypothetical protein | |||
| 4810 | 59 aa hypothetical protein | |||
| 4815 | M | M.Hpy1198ORF5810P (100% identity) | ACNGT | M.Hpy1089ORF4815P |
| 4820 | R | Hpy1198ORF5810P (100% identity) | ACNGT | Hpy1089ORF4815P |
| 4825 | restriction endonuclease | |||
| 4820 | pseudogene | |||
| 4825 | M | M.Hpy1198ORF5820P (100% identity) | ACGT | M.Hpy1089ORF4825P |
| 4830 | catalase | |||
| 7430 | DEAD/DEAH box helicase | |||
| 7435 | RM | Hpy1198ORF6480P (100% identity) | Hpy1089ORF7435P | |
| 7440 | 30 aa hypothetical protein | |||
| 4150 | nicotinate-nucleotide pyrophosphorylase | |||
| 4155 | RM | Hpy1198ORF2360P (100% identity) | Hpy1089ORF4155P | |
| 4160 | peptidase S41 | |||
| 195 | 59 aa hypothetical protein | |||
| 200 | M | M.Hpy1198ORF3090P (100% identity) | CATG | M.Hpy1089ORF200P |
| 205 | hydrolase | |||
| 625 | chaperone protein ClpB | |||
| 630 | M | M.Hpy1198ORF5505P (100% identity) | CCGG | M.Hpy1089ORF630P |
| ??? | R | hypothetical protein | CCGG | Hpy1089ORF630P |
| 1380 | proline:sodium symporter PutP | |||
| 1385 | M | M2.Hpy1198ORF1650P (100% identity) | CCTC | M2.Hpy1089ORF1385P |
| 1390 | M | M1.Hpy1198ORF1650P (100% identity) | CCTC | M1.Hpy1089ORF1385P |
| 1395 | agmatine deiminase | |||
| 2170 | membrane protein | |||
| ??? | RM | Hpy1198ORF315BP (100% identity) | Hpy1089ORF2175CP | |
| ??? | RM | 417 aa hypothetical protein, partial | Hpy1089ORF2175BP | |
| ??? | RM | Hpy1198ORF315AP (53% identity) | Hpy1089ORF2175AP | |
| 2185 | glycerol-3-phosphate dehydrogenase | |||
| 7515 | membrane protein | |||
| 7520 | R | Hpy1198ORF6580P (100% identity) | CCATC | Hpy1089ORF7535P |
| 7525 | 23 aa hypothetical protein | |||
| 7530 | 61 aa hypothetical protein | |||
| 7535 | M | M2.Hpy1198ORF6580P (100% identity) | CCATC | M2.Hpy1089ORF7535P |
| 7540 | M | M1.Hpy1198ORF6580P (100% identity) | CCATC | M1.Hpy1089ORF7535P |
| 7545 | permease | |||
| 7670 | amidophosphoribosyltransferase | |||
| 7675 | RM | HpyCO2XVIII (98% identity) | Hpy1089ORF7675P | |
| 7680 | S | S1.Hpy1198ORF6720P (89% identity) | S1.Hpy1089ORF7675P | |
| 7685 | S | restriction endonuclease subunit R | S2.Hpy1089ORF7675P | |
| 7690 | DNA polymerase I | |||
| 3075 | pseudogene | |||
| 3080 | R | Hpy1198ORF2585P (100% identity) | Hpy1089ORF3080P | |
| 3085 | N-acetylneuraminate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4025 | R | Hpy1198ORF2235P (93% identity) | Hpy1089ORF4030P | |
| 4030 | M | M.Hpy1198ORF2235P (100% identity) | M.Hpy1089ORF4030P | |
| 4035 | endonuclease | |||
| 4085 | rod shape-determining protein MreC | |||
| 4090 | R | HpyP004ORF6365P (91% identity) | Hpy1089ORF4095P | |
| 4095 | M | M.Hpy1198ORF2300P (100% identity) | M.Hpy1089ORF4095P | |
| 4100 | chemotaxis protein CheY | |||
| 7415 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy1198ORF6465P (100% identity) | M.Hpy1089ORF7420P | |
| 7430 | R | Hpy1198ORF6465P (100% identity) | Hpy1089ORF7420P | |
| 7435 | pseudogene | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3070 | 86 aa hypothetical protein | |||
| 3075 | R | Hpy1198McrBP (100% identity) | Hpy1089McrBP | |
| 3080 | llaJI restriction endonuclease | |||