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Putative Helicobacter pylori 26695-1MET RM systems
Ref: Binh,T. et al. unpublished
REBASE ref # 18924
Complete sequence: 1,667,303 bp
GenBank #: CP010436
REBASE acronym: Hpy1MET
Org_num: 14692
All begin SE88_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2390 | 162 aa hypothetical protein | |||
2395 | S | S.HpyS299ORF3810P (100% identity) | S.Hpy1METORF2405P | |
2400 | type I restriction enzyme M protein | |||
2405 | M | M.HpyS299ORF3810P (100% identity) | M.Hpy1METORF2405P | |
2410 | R | HpyS299ORF3810P (100% identity) | Hpy1METORF2405P | |
2415 | 631 aa hypothetical protein | |||
4020 | 48 aa hypothetical protein | |||
4025 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.Hpy1METORF4025P |
4030 | cadmium transporter | |||
4305 | hydroxyethylthiazole kinase | |||
??? | R | HpyRif2ORF4365P (100% identity) | Hpy1METORF4310P | |
4315 | 33 aa hypothetical protein | |||
4315 | 33 aa hypothetical protein | |||
??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.Hpy1METORF4330P |
4330 | M | M.HpyS299ORF1890P (100% identity) | CTANNNNNNNNTGT | M.Hpy1METORF4330P |
4335 | membrane protein | |||
7210 | metal-dependent hydrolase | |||
??? | R | HpyS299ORF7180P (100% identity) | Hpy1METORF7220P | |
7220 | M | M.HpyS299ORF7180P (100% identity) | M.Hpy1METORF7220P | |
??? | S | S.HpyRif2ORF7260P (100% identity) | S.Hpy1METORF7220P | |
7230 | 74 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
260 | agmatine deiminase | |||
265 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.Hpy1METORF265P |
270 | M | M1.HpyS299III (100% identity) | CCTC | M2.Hpy1METORF265P |
275 | R | HpyS299IIIP (100% identity) | CCTC | Hpy1METORF265P |
280 | restriction endonuclease Hin4II | |||
275 | HNH endonuclease family protein | |||
280 | R | HpyS299VIIIP (100% identity) | CCTTC | Hpy1METORF285P |
285 | M | M.HpyS299VIII (100% identity) | CCTTC | M.Hpy1METORF285P |
290 | proline:sodium symporter PutP | |||
475 | malonyl CoA-ACP transacylase | |||
485 | R | HpyS299VP (100% identity) | GATC | Hpy1METORF490P |
490 | M | M.HpyS299V (100% identity) | GATC | M.Hpy1METORF490P |
495 | alpha-1,2-fucosyltransferase | |||
1335 | exodeoxyribonuclease VII large subunit | |||
??? | M | M.HpyS299VII (100% identity) | TCGA | M.Hpy1METORF1340P |
1345 | 132 aa hypothetical protein | |||
1345 | 132 aa hypothetical protein | |||
??? | R | HpyS299ORF4845P (100% identity) | CCGG | Hpy1METORF1355P |
1355 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.Hpy1METORF1355P |
1360 | chaperone protein ClpB | |||
1885 | Laminin subunit alpha-2 precursor | |||
1890 | R | HpyRif2ORF1870P (100% identity) | TCNNGA | Hpy1METORF1895P |
1895 | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.Hpy1METORF1895P |
1900 | acetyl-CoA carboxylase | |||
2475 | membrane protein | |||
2480 | M | M.HpyS299II (100% identity) | ATTAAT | M.Hpy1METORF2480P |
2485 | glycosyltransferase 9 family protein | |||
2490 | GTP-binding protein | |||
2495 | M | M.HpyS299ORF3710P (100% identity) | ACNGT | M.Hpy1METORF2495P |
2500 | R | HpyS299ORF3710P (100% identity) | ACNGT | Hpy1METORF2495P |
2505 | DNA methyltransferase | |||
2500 | 207 aa hypothetical protein | |||
2505 | M | M.HpyS299ORF3700P (100% identity) | ACGT | M.Hpy1METORF2505P |
2510 | R | HpyS299ORF3700P (100% identity) | ACGT | Hpy1METORF2505P |
2515 | 81 aa hypothetical protein | |||
2600 | DNA gyrase subunit B | |||
??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.Hpy1METORFBP |
??? | R | HpyRif2ORFDP (100% identity) | GTAC | Hpy1METORFBP |
2615 | membrane protein | |||
3435 | pseudogene | |||
3440 | RM | HpyP79ORF405P (100% identity) | Hpy1METORF3440P | |
3445 | 449 aa hypothetical protein | |||
4640 | flagellar hook protein FlgE | |||
4645 | R | HpyS299ORF1570P (100% identity) | GTNNAC | Hpy1METORF4650P |
4650 | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.Hpy1METORF4650P |
4655 | ATP-dependent DNA helicase | |||
5755 | 144 aa hypothetical protein | |||
5760 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.Hpy1METORF5760P |
5765 | flagellar biosynthesis anti-sigma factor FlgM | |||
6235 | hydrolase | |||
6240 | M | M.HpyS299I (100% identity) | CATG | M.Hpy1METORF6240P |
6245 | R | HpyRif2ORF6260P (100% identity) | CATG | Hpy1METORF6240P |
6250 | serine acetyltransferase | |||
6955 | peptidase S41 | |||
6960 | R | HpyS299ORF8615P (100% identity) | GANTC | Hpy1METORF6965P |
6965 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.Hpy1METORF6965P |
??? | Type IIG R-M system | |||
6965 | DNA methyltransferase | |||
??? | RM | HpyRif2ORF6990P (100% identity) | Hpy1METORF6980P | |
6985 | nicotinate-nucleotide pyrophosphorylase | |||
7035 | chemotaxis protein CheY | |||
7040 | R | HpyS299ORF7360P (100% identity) | GAAGA | Hpy1METORF7045P |
7045 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.Hpy1METORF7045P |
7050 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.Hpy1METORF7045P |
7055 | adenine methyltransferase | |||
7580 | DNA polymerase I | |||
7585 | S | S.HpyA1ORFDP (100% identity) | S.Hpy1METORF7590P | |
7590 | RM | HpyS299ORF6805P (100% identity) | Hpy1METORF7590P | |
7595 | amidophosphoribosyltransferase | |||
7805 | 179 aa hypothetical protein | |||
7810 | RM | HpyS299ORF6590P (100% identity) | GCGTA | Hpy1METORF7810P |
7815 | restriction endonuclease | |||
7905 | transposase | |||
7910 | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.Hpy1METORF7910P |
??? | R | HpyCGRORF1559P (100% identity) | TGCA | Hpy1METORF7910P |
7920 | cytochrome C | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
3060 | 2-oxoglutarate:acceptor oxidoreductase | |||
3065 | R | HpyS299VIP (97% identity) | GCAG | Hpy1METORF3070P |
3070 | M | M.HpyS299VI (100% identity) | GCAG | M.Hpy1METORF3070P |
3075 | 54 aa hypothetical protein | |||
7050 | restriction endonuclease subunit M | |||
7055 | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.Hpy1METORFAP |
7060 | R | HpyS299ORF7350P (100% identity) | TCAG | Hpy1METORFAP |
7065 | rod shape-determining protein MreC | |||
7820 | pseudogene | |||
7825 | R | HpyS299ORF6570P (100% identity) | Hpy1METORF7830P | |
??? | M | M.HpyRif2ORFBP (100% identity) | M.Hpy1METORF7830P | |
7840 | ATP-dependent DNA helicase RecG |