Helicobacter pylori Hp238 |
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Putative Helicobacter pylori Hp238 RM systems
Ref: Kao,C.-Y. and Wu,J.-J. unpublished
REBASE ref # 19207
Complete sequence: 1,586,473 bp
GenBank #: CP010013
REBASE acronym: Hpy238
Org_num: 14664
All begin OI67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2350 | polyphosphate kinase | |||
| 2360 | S | S.Hpyfe97ORF5205P (98% identity) | S.Hpy238ORF2365P | |
| 2365 | M | M.HpyF94ORF793P (96% identity) | M.Hpy238ORF2365P | |
| 2370 | R | Hpyfe74ORF5025P (94% identity) | Hpy238ORF2365P | |
| 2375 | 631 aa hypothetical protein | |||
| 3965 | membrane protein | |||
| ??? | S | S.Hpyfe65ORF2980P (90% identity) | S1.Hpy238ORF3970P | |
| ??? | S | S.Hpyfe63ORF3280P (52% identity) | S2.Hpy238ORF3970P | |
| 3975 | cadmium transporter | |||
| 4275 | hydroxyethylthiazole kinase | |||
| 4280 | R | HpyTW24ORF4295P (97% identity) | Hpy238ORF4290P | |
| 4285 | S | S.HpyOK95ORFOP (96% identity) | S.Hpy238ORF4290P | |
| 4290 | M | M.Hpyfe73ORF4650P (95% identity) | M.Hpy238ORF4290P | |
| 4295 | membrane protein | |||
| 7325 | FAD-dependent thymidylate synthase | |||
| 7335 | S | S.HpyAR9III (98% identity) | S.Hpy238ORF7345P | |
| 7340 | CAAX protease | |||
| 7345 | M | M.HpySG33XIII (96% identity) | M.Hpy238ORF7345P | |
| 7350 | R | Hpyfe74ORF7605P (96% identity) | Hpy238ORF7345P | |
| 7355 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DNA methylase | |||
| 205 | M | M1.HpySG15VIII (99% identity) | GAAGA | M1.Hpy238ORF205P |
| 210 | M | M1.Hpyfe6ORF6865P (100% identity) | GAAGA | M2.Hpy238ORF205P |
| 215 | R | HpyK027VP (98% identity) | GAAGA | Hpy238ORF205P |
| 220 | chemotaxis protein CheY | |||
| 270 | nicotinate-nucleotide pyrophosphorylase | |||
| 275 | RM | Hpy102ORF490P (85% identity) | Hpy238ORF275P | |
| 280 | peptidase S41 | |||
| 320 | non-functional type II restriction endonuclease | |||
| 325 | M | M2.Hpyfe126ORF6925P (95% identity) | CCTC | M1.Hpy238ORF325P |
| 330 | M | M1.Hpyfe58ORF7035P (98% identity) | CCTC | M2.Hpy238ORF325P |
| 335 | R | HpyUM023ORF1910P (96% identity) | CCTC | Hpy238ORF325P |
| 340 | restriction endonuclease | |||
| 335 | restriction endonuclease | |||
| 340 | M | M.HpyZ008VIII (99% identity) | GTSAC | M.Hpy238ORF340P |
| 345 | R | HpyBR15XVP (99% identity) | GTSAC | Hpy238ORF340P |
| 350 | proline:sodium symporter PutP | |||
| 530 | malonyl CoA-ACP transacylase | |||
| 540 | R | HpyP37ORFIP (97% identity) | GATC | Hpy238ORF545P |
| 545 | M | M.HpyJ002XII (98% identity) | GATC | M.Hpy238ORF545P |
| 550 | alpha-1,2-fucosyltransferase | |||
| 960 | ATPase AAA | |||
| 965 | R | R2.HpyAR9ORF950P (97% identity) | Hpy238ORF965P | |
| 970 | N-acetylneuraminate synthase | |||
| 1375 | exodeoxyribonuclease VII large subunit | |||
| 1380 | M | M.Hpyfe24ORF5940P (100% identity) | TCGA | M.Hpy238ORF1380P |
| 1385 | 204 aa hypothetical protein | |||
| 1385 | 204 aa hypothetical protein | |||
| 1390 | R | HpyV006IIIP (98% identity) | CCGG | Hpy238ORF1395P |
| 1395 | M | M.Hpyfe75ORF5835P (99% identity) | CCGG | M.Hpy238ORF1395P |
| 1400 | chaperone protein ClpB | |||
| 1630 | polysaccharide deacetylase | |||
| 1635 | R | HpyV007VP (97% identity) | CTNAG | Hpy238ORF1640P |
| 1640 | M | M.HpyT026VII (99% identity) | CTNAG | M.Hpy238ORF1640P |
| 1645 | 125 aa hypothetical protein | |||
| 2440 | membrane protein | |||
| 2445 | M | M.Hpyfe59ORF4860P (98% identity) | ATTAAT | M.Hpy238ORF2445P |
| 2450 | glycosyltransferase 9 family protein | |||
| 2455 | GTP-binding protein | |||
| 2460 | M | M.HpyTW04ORF2395P (98% identity) | ACGT | M.Hpy238ORF2460P |
| 2465 | R | HpyOK316ORFMP (98% identity) | ACGT | Hpy238ORF2460P |
| 2470 | catalase | |||
| 2555 | DNA gyrase subunit B | |||
| 2560 | M | M.HpyK044VIII (99% identity) | GTAC | M.Hpy238ORF2560P |
| 2565 | R | HpyK013VIIIP (98% identity) | GTAC | Hpy238ORF2560P |
| 2570 | membrane protein | |||
| 3345 | 3'-5' exonuclease | |||
| 3350 | R | HpyTN2ORF7450P (99% identity) | GGNNCC | Hpy238ORF3355P |
| 3355 | M | M.HpyTW06ORF3320P (99% identity) | GGNNCC | M.Hpy238ORF3355P |
| 3360 | 3-5 exonuclease | |||
| 3440 | 450 aa hypothetical protein | |||
| 3445 | RM | Hpyfe103ORF3750P (80% identity) | Hpy238ORF3445P | |
| 3450 | glycerol-3-phosphate dehydrogenase | |||
| 4120 | osmoprotection binding protein | |||
| 4125 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | Hpy238ORF4130P |
| 4130 | M | M.Hpyfe73ORF4490P (100% identity) | CGWCG | M.Hpy238ORF4130P |
| 4135 | osmoprotection protein | |||
| 4570 | flagellar hook protein FlgE | |||
| 4575 | R | HpyK051VIIP (96% identity) | GTNNAC | Hpy238ORF4580P |
| 4580 | M | M.HpyUM085ORF7865P (99% identity) | GTNNAC | M.Hpy238ORF4580P |
| 4585 | ATP-dependent DNA helicase | |||
| 5245 | acetyl-CoA carboxylase | |||
| 5250 | M | M.HpyJA108X (99% identity) | TCNNGA | M.Hpy238ORF5250P |
| 5255 | R | Hpy1838CXP (100% identity) | TCNNGA | Hpy238ORF5250P |
| 5260 | Laminin subunit alpha-2 precursor | |||
| 5425 | 144 aa hypothetical protein | |||
| 5430 | M | M.HpyOK304ORFZP (100% identity) | GCGC | M.Hpy238ORF5430P |
| 5435 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5870 | hydrolase | |||
| 5875 | M | M.HpyTW16I (99% identity) | CATG | M.Hpy238ORF5875P |
| 5880 | 94 aa hypothetical protein | |||
| 6725 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6730 | M | M.Hpyfe77ORF545P (100% identity) | GAATTC | M.Hpy238ORF6730P |
| 6735 | R | HpySG19ORF6700P (85% identity) | GAATTC | Hpy238ORF6730P |
| 6740 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7005 | DNA polymerase I | |||
| 7010 | S | S.Hpyfe28ORF285P (93% identity) | S.Hpy238ORF7015P | |
| 7015 | RM | HpyU208ORF7110P (97% identity) | Hpy238ORF7015P | |
| 7020 | amidophosphoribosyltransferase | |||
| 7145 | permease | |||
| 7150 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M1.Hpy238ORF7150P |
| 7155 | M | M1.Hpyfe56ORF140P (99% identity) | CCATC | M2.Hpy238ORF7150P |
| 7160 | R | Hpy5086ORF1440P (95% identity) | CCATC | Hpy238ORF7150P |
| 7165 | membrane protein | |||
| 7245 | pseudogene | |||
| 7250 | RM | HpyQ59ORFVP (92% identity) | Hpy238ORF7250P | |
| 7255 | DEAD/DEAH box helicase | |||
| 7440 | 67 aa hypothetical protein | |||
| 7445 | M | M.HpyML3ORFHP (100% identity) | TGCA | M.Hpy238ORF7445P |
| 7450 | R | Hpyfe33ORF7390P (98% identity) | TGCA | Hpy238ORF7445P |
| 7455 | DNA methyltransferase | |||
| 7450 | Type II restriction enzyme | |||
| 7455 | M | M.HpyOK310ORFIP (97% identity) | M.Hpy238ORF7455P | |
| 7460 | 366 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 190 | rod shape-determining protein MreC | |||
| 195 | R | HpyCHN3XIIIP (95% identity) | Hpy238ORF200P | |
| ??? | M | M.HpyML1ORFIP (92% identity) | M.Hpy238ORF200P | |
| 205 | restriction endonuclease subunit M | |||
| 6655 | citrate synthase | |||
| 6660 | M | M.HpyZ008ORF6380P (94% identity) | M.Hpy238ORF6660P | |
| 6665 | R | HpyID3ORF6450P (91% identity) | Hpy238ORF6660P | |
| 6670 | biotin synthase | |||
| 7250 | restriction endonuclease | |||
| 7255 | R | HpyGC26ORFH1P (97% identity) | Hpy238ORF7260P | |
| ??? | M | M.Hpy458ORFIP (97% identity) | M.Hpy238ORF7260P | |
| 7270 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 955 | pseudogene | |||
| 960 | R | R1.HpyJ019ORF990P (98% identity) | Hpy238McrBP | |
| 965 | llaJI restriction endonuclease | |||