Campylobacter subantarcticus LMG 24374 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Campylobacter subantarcticus LMG 24374 RM systems
Ref: Miller,W.G. et al. Genome Biol Evol (2014) In press
REBASE ref # 18896
Complete sequence: 1,782,536 bp
GenBank #: CP007772
REBASE acronym: Csu24374
Org_num: 14645
All begin CSUB8521_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 374 | DNA helicase (AAA domain) | |||
| 375 | R | Csp216ORF1850P (98% identity) | GAYNNNNNNNTYTC | Csu24374IIP |
| 376 | ATPase, AAA family | |||
| 377 | S | S.Cla21009ORF344P (92% identity) | GAYNNNNNNNTYTC | S.Csu24374II |
| 378 | Fic domain protein | |||
| 379 | M | M.Csp216ORF1850P (99% identity) | GAYNNNNNNNTYTC | M.Csu24374II |
| 380 | molybdopterin molybdenumtransferase | |||
| 1316 | thiamin biosynthesis protein | |||
| 1317 | S | S.Cje414ORF240012P (97% identity) | S.Csu24374ORF1320P | |
| 1318 | 167 aa hypothetical protein | |||
| 1319 | 238 aa hypothetical protein (DUF3800 domain) | |||
| 1320 | M | M.CcoJV20ORF453P (98% identity) | M.Csu24374ORF1320P | |
| 1321 | N-succinyl-diaminopimelate deacylase | |||
| 1778 | recombination factor protein RarA | |||
| 1780 | M | M.Cla218ORF5870P (98% identity) | ATCNNNNNNNTCC | M.Csu24374III |
| 1781 | S | S.Cje3ORF4235P (65% identity) | ATCNNNNNNNTCC | S.Csu24374III |
| 1782 | ATPase, AAA family | |||
| 1783 | R | Cla218ORF5870P (97% identity) | ATCNNNNNNNTCC | Csu24374IIIP |
| 1784 | 206 aa hypothetical protein (DUF305 domain) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 28 | translation initiation factor IF-3 | |||
| 29 | M | M.Cla16701ORF33P (97% identity) | RAATTY | M.Csu24374I |
| 30 | transcriptional regulator (WYL domain) | |||
| 51 | SAM-dependent methyltransferase | |||
| 52 | RM | Cla16701ORF49P (91% identity) | Csu24374ORF52P | |
| 53 | dihydroorotase, homodimeric type | |||
| 109 | imidazoleglycerol-phosphate dehydratase / | |||
| 110 | M | M1.Csu24377ORF104P (100% identity) | GATC | M1.Csu24374ORF110P |
| 111 | M | M.Cla00ORF520P (98% identity) | GATC | M2.Csu24374ORF110P |
| 112 | imidazole glycerol phosphate synthase HisFH, | |||
| 943 | 95 aa hypothetical protein | |||
| 944 | M | M.Csu24377ORF972P (100% identity) | M.Csu24374ORF944P | |
| 945 | phage virion morphogenesis protein | |||
| 1528 | type II restriction endonuclease | |||
| 1529 | RM | Csu24377ORF1625P (97% identity) | Csu24374ORF1529P | |
| 1530 | Sel1 domain repeat-containing protein | |||
| 1648 | membrane protein | |||
| 1649 | RM | Cla218ORF6445P (89% identity) | Csu24374ORF1649P | |
| 1650 | molybdopterin-containing oxidoreductase II, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1457 | ribose-phosphate diphosphokinase | |||
| 1458 | M | M.Csu24377ORF1554P (100% identity) | M.Csu24374ORF1458P | |
| 1459 | R | Csu24377ORF1554P (99% identity) | Csu24374ORF1458P | |
| 1460 | pseudogene | |||
| 1556 | lipid A disaccharide synthase | |||
| 1557 | R | Cla22395ORF1350P (95% identity) | Csu24374ORF1559P | |
| 1558 | 229 aa hypothetical protein (DUF4145 domain) | |||
| 1559 | M | M.Csu24377ORF1655P (80% identity) | M.Csu24374ORF1559P | |
| 1560 | arsenite-transporting ATPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 232 | 95 aa hypothetical protein | |||
| 233 | R | Cin12928McrBP (54% identity) | Csu24374McrBP | |
| 234 | R | Cje17fMcrCP (77% identity) | Csu24374McrCP | |
| 235 | motility accessory factor | |||