Shewanella oneidensis MR-1 |
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Putative Shewanella oneidensis MR-1 RM systems
Ref: Daraselia,N. et al. OMICS 7 (2), 171-175 (2003)
REBASE ref # 7875
| Sequence length: | GenBank #: | |
| Chromosome: | 4,969,811 bp | AE014299 (NC_004347) |
| plasmid pMR-1: | 161,613 bp | AE014300 (NC_004349) |
REBASE acronym: Son
Org_num: 3531
All begin SO_, SO_A
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 379 | protein of unknown function DUF45 | |||
| 380 | R | SonMR1ORF4430P (100% identity) | TGAYNNNNNNTGAC | SonIIP |
| 381 | type I RM locus Fic family protein | |||
| 382 | S | S.SonMR1ORF4430P (100% identity) | TGAYNNNNNNTGAC | S.SonII |
| 383 | M | M.SonMR1ORF4430P (100% identity) | TGAYNNNNNNTGAC | M.SonII |
| 384 | protein of unknown function DUF3296 | |||
| 4263 | phage P1-related protein in restrction | |||
| 4264 | S | S.SonMR1ORF265P (100% identity) | TACNNNNNNGTNGT | S.SonIV |
| 4265 | M | M.SonMR1ORF265P (100% identity) | TACNNNNNNGTNGT | M.SonIV |
| 4266 | Fic family protein MloA | |||
| 4267 | R | SonMR1ORF265P (100% identity) | TACNNNNNNGTNGT | SonIVP |
| 4268 | ISSod2 transposase TnpA_ISSod2 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 288 | cell division protein DamX | |||
| 289 | M | M.SonMR1DamP (99% identity) | M.SonDamP | |
| 290 | protein of unknown function DUF2970 | |||
| 689 | Mu phage uncharacterized protein | |||
| 690 | M | M.SonMR1ORF5860P (100% identity) | M.SonORF690P | |
| 691 | protein of unknown function | |||
| 1456 | ISSod11 transposase TnpA_ISSod11 | |||
| 1457 | M | M.SonMR1ORF9360P (100% identity) | GACNNNNTGC | M.SonIII |
| 1458 | P-loop ATPase superfamily protein | |||
| 1459 | concanavalin A-like lectin/glucanase domain | |||
| 1460 | S | S.SonMR1ORF9360P (100% identity) | S.SonORFIII | |
| 1461 | serine/threonine protein kinase | |||
| 3003 | Lambda phage uncharacterized protein | |||
| 3004 | M | M.SonMR1ORF16555P (100% identity) | GATC | M.SonORF3004P |
| 3005 | Lambda phage uncharacterized protein | |||
| 3005 | Lambda phage uncharacterized protein | |||
| 3006 | M | M.SonMR1ORF16565P (100% identity) | M.SonORF3006P | |
| 4794 | Lambda phage uncharacterized protein | |||
| plasmid pMR-1 | ||||
| 1 | plasmid replication initiation protein RepA | |||
| 2 | C | C.Vpa1708ORFDP (78% identity) | C.SonIP | |
| 3 | R | Vpa1708ORFDP (81% identity) | ATCGAT | SonI |
| ??? | M | M.Vpa1708ORFDP (76% identity) | ATCGAT | M.SonI |
| 5 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 367 | Fic family protein | |||
| 368 | R | SonMR1ORF4360P (100% identity) | SonORF368P | |
| 369 | transcriptional regulator LysR family | |||