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Putative Helicobacter species MIT 05-5293 RM systems
Ref: Sheh,A. et al. unpublished
REBASE ref # 18605
GenBank #: JROZ00000000
REBASE acronym: Hsp5293
Org_num: 14435
All begin LS68_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
10015 | R | DEAD/DEAH box helicase | Hsp5293ORF10015P | |
10020 | S | S.FspGS13ORF105P (22% identity) | S.Hsp5293ORF10015P | |
10025 | 2,5-diketo-D-gluconic acid reductase | |||
10030 | M | M.Hsp5293ORF6060P (99% identity) | M.Hsp5293ORF10030P | |
10035 | S | S.Hsp5293ORF6060P (91% identity) | S.Hsp5293ORF10030P | |
10300 | S | S.Hap1501ORF4715P (33% identity) | S.Hsp5293ORF10300P | |
9465 | transcriptional regulator | |||
9470 | M | M.HmuST1ORF4245P (84% identity) | M.Hsp5293ORF9455P | |
9475 | acetyltransferase | |||
8935 | 192 aa hypothetical protein | |||
8940 | M | M.Hty6810ORF3025P (78% identity) | M.Hsp5293ORF6110P | |
8945 | 91 aa hypothetical protein | |||
??? | S | S.Hsp5293ORF6110P (63% identity) | S1.Hsp5293ORF6110P | |
8950 | S | S1.Hsp5293ORF6110P (63% identity) | S.Hsp5293ORF6110P | |
??? | S | predicted protein | S2.Hsp5293ORF6110P | |
8955 | 122 aa hypothetical protein | |||
8960 | 325 aa hypothetical protein | |||
8965 | R | Hap1501ORF4375P (76% identity) | Hsp5293ORF6110P | |
8970 | ankyrin | |||
7760 | 500 aa hypothetical protein | |||
7765 | S | S1.Cup736ORF30P (52% identity) | S.Hsp5293ORF7770P | |
7770 | M | M.Hci12219ORF47P (79% identity) | M.Hsp5293ORF7770P | |
7775 | 280 aa hypothetical protein | |||
6050 | molybdopterin biosynthesis protein | |||
6055 | S | S.Hsp5293ORF10030P (91% identity) | S.Hsp5293ORF6060P | |
6060 | M | M.Hsp5293ORF10030P (99% identity) | M.Hsp5293ORF6060P | |
6065 | 2,5-diketo-D-gluconic acid reductase | |||
6105 | 192 aa hypothetical protein | |||
6110 | M | M.Hty6810ORF3025P (78% identity) | M.Hsp5293ORF6110P | |
6115 | 91 aa hypothetical protein | |||
6120 | S | S1.Hsp5293ORF6110P (63% identity) | S.Hsp5293ORF6110P | |
6125 | 122 aa hypothetical protein | |||
6130 | 325 aa hypothetical protein | |||
6135 | R | Hap1501ORF4375P (76% identity) | Hsp5293ORF6110P | |
6140 | ankyrin | |||
3940 | 358 aa hypothetical protein | |||
3945 | S | S1.AspE39ORF6975P (28% identity) | S.Hsp5293ORF3950P | |
3950 | M | M.Hca12410ORF129P (61% identity) | M.Hsp5293ORF3950P | |
3955 | R | Hca12410ORF129P (54% identity) | Hsp5293ORF3950P | |
3960 | 429 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
8390 | 30S ribosomal protein S2 | |||
8395 | M | M.Hsp6451ORF9990P (66% identity) | CATG | M1.Hsp5293ORF8395P |
8400 | 149 aa hypothetical protein C809_01959 | |||
8405 | M | M1.Cig1214ORF915P (39% identity) | CATG | M2.Hsp5293ORF8395P |
8410 | RNA polymerase sigma54 factor | |||
165 | 3-isopropylmalate dehydrogenase | |||
170 | RM | Hsp5569ORF9475P (10% identity) | Hsp5293ORF170P | |
175 | 203 aa hypothetical protein | |||
5050 | aldehyde oxidase | |||
5055 | M | M.Hfe13102ORF1054P (77% identity) | ACNGT | M.Hsp5293ORF5055P |
5060 | R | HhiYS1ORFOP (88% identity) | ACNGT | Hsp5293ORF5055P |
5065 | 85 aa hypothetical protein | |||
5170 | arginyl-tRNA--protein transferase | |||
5175 | RM | HmuST1ORF2160P (44% identity) | Hsp5293ORF5175P | |
5180 | carbon starvation protein A | |||
5265 | ferrous iron transporter B | |||
5275 | M | M.RpiECORF50P (27% identity) | M1.Hsp5293ORF5275P | |
5280 | M | M1.Sov2ORF4510P (31% identity) | M2.Hsp5293ORF5275P | |
5285 | 80 aa hypothetical protein | |||
5900 | chemotaxis protein, partial | |||
5905 | RM | Hsp5569ORF9475P (36% identity) | Hsp5293ORF5905P | |
??? | hypothetical protein | |||
5905 | type II restriction endonuclease | |||
??? | RM | HmuST1ORF4975P (39% identity) | Hsp5293ORF5910P | |
5915 | 182 aa hypothetical protein LS69_11785, partial | |||
1475 | 170 aa hypothetical protein | |||
1480 | M | M.HhiYS1ORFC1P (78% identity) | AAGCTT | M.Hsp5293ORF1480P |
1485 | 242 aa hypothetical protein | |||
6450 | 170 aa hypothetical protein | |||
??? | M | M.HmuST1ORF8960P (56% identity) | GTSAC | M.Hsp5293ORFAP |
6460 | 119 aa hypothetical protein | |||
6525 | 160 aa hypothetical protein | |||
6530 | M | M.Hbi43879ORF1253P (46% identity) | M.Hsp5293ORF6530P | |
6535 | 74 aa hypothetical protein | |||
2505 | pseudogene | |||
2510 | RM | Hsp6451ORF3165P (43% identity) | Hsp5293ORF2500CP | |
2515 | RM | Taz9ORF385P (7% identity) | Hsp5293ORF2500BP | |
2520 | RM | Hsp1614ORF2475BP (50% identity) | Hsp5293ORF2500AP | |
2525 | alpha-2-macroglobulin family N-terminal region, partial | |||
2605 | adenylosuccinate lyase | |||
2610 | M | M.HmuST1ORF3175P (77% identity) | GANTC | M.Hsp5293ORF2610P |
2615 | citrate:succinate antiporter | |||
4330 | 62 aa hypothetical protein | |||
4335 | R | Hty6810ORFAP (86% identity) | GTSAC | Hsp5293ORF4335P |
4340 | 736 aa hypothetical protein | |||
4540 | 84 aa hypothetical protein | |||
4545 | RM | Hfe50ORF1365P (55% identity) | Hsp5293ORF4540P | |
4550 | membrane protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2635 | chemotaxis protein, partial | |||
2640 | M | M.Hca1463ORFIP (30% identity) | M.Hsp5293ORF2640P | |
2645 | R | Hsp5569ORF10020P (65% identity) | Hsp5293ORF2640P | |
2650 | 232 aa hypothetical protein LS65_06825 | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
8910 | 249 aa hypothetical protein | |||
8915 | R | Hsp6451McrBP (33% identity) | Hsp5293McrBP | |
8920 | R | Hsp5569McrCP (57% identity) | Hsp5293McrCP | |
8925 | 208 aa hypothetical protein | |||
6080 | 249 aa hypothetical protein | |||
6085 | R | Hsp6451McrBP (33% identity) | Hsp5293McrBP | |
6090 | R | Hsp5569McrCP (57% identity) | Hsp5293McrCP | |
6095 | 208 aa hypothetical protein |