Ref: Chan,Y. et al. unpublished

REBASE ref # 18829

Complete sequence: 2,708,067 bp

GenBank #: CP009227

REBASE acronym: Tsp838

Org_num: 14154

 

All begin JO41_

Type I
ORF Gene Most similar Specificity Name
 
5465 radical SAM protein
5470 S S.Tsp305ORF1550P (31% identity) S1.Tsp838ORF5485P
??? S S1.Tsp855ORF11435P (85% identity) S2.Tsp838ORF5485P
5485 M M.Tsp855ORF11435P (98% identity) M.Tsp838ORF5485P
5490 89 aa hypothetical protein
 
6125 DNA polymerase IV
??? R Tsp855ORF10760P (100% identity) Tsp838ORF6185P
6140 toxin PIN
6145 RelB/DinJ family addiction module antitoxin
6150 S S2.Tsp855ORF10760P (100% identity) S1.Tsp838ORF6185P
6160 integrase
6165 89 aa hypothetical protein
6170 103 aa hypothetical protein
6175 S S4.Tsp855ORF10760P (100% identity) S2.Tsp838ORF6185P
??? S S1.Tsp857ORF1100P (100% identity) S3.Tsp838ORF6185P
6185 M M.Tsp855ORF10760P (99% identity) M.Tsp838ORF6185P
6190 chemotaxis protein
 
6780 peptidase M20
6785 M M.Tsp806ORF2755P (93% identity) M.Tsp838ORF6785P
6790 157 aa hypothetical protein
6795 S S.Tsp806ORF2755P (45% identity) S.Tsp838ORF6785P
6800 anticodon nuclease
6805 R Yfr418IP (72% identity) Tsp838ORF6785P
6815 methanol dehydrogenase
Type II
ORF Gene Most similar Specificity Name
 
2060 108 aa hypothetical protein
2065 M M.Tpu846ORF9455P (68% identity) M.Tsp838ORF2065P
2070 79 aa hypothetical protein
 
4890 97 aa hypothetical protein
??? M M.Tsp855ORF11990P (95% identity) M.Tsp838ORFCP
4900 transcriptional regulator
 
5310 hindIII restriction endonuclease
5315 M M.Tsp855ORF11600P (100% identity) AAGCTT M.Tsp838ORF5315P
5320 315 aa hypothetical protein
 
8280 118 aa hypothetical protein
??? M 470 aa hypothetical protein M.Tsp838ORFAP
8290 89 aa hypothetical protein
 
8330 284 aa hypothetical protein
??? M M.Tsp855ORF135P (98% identity) M.Tsp838ORFBP
8340 246 aa hypothetical protein
 
8560 66 aa hypothetical protein
8565 M M2.Tsp855ORF8765P (100% identity) GATC M1.Tsp838ORF8565P
8570 R Tsp855ORF8765P (100% identity) GATC Tsp838ORF8565P
8580 M M1.Tsp855ORF8765P (99% identity) GATC M2.Tsp838ORF8565P
8585 347 aa hypothetical protein
 
12720 246 aa hypothetical protein
12725 M M.Tvi802ORF2065P (97% identity) M.Tsp838ORF12725P
12730 286 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
2460 multidrug transporter MATE
??? R Tsp855ORF2585P (100% identity) Tsp838ORFDP
2470 transposase